DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cyp28c1 and Cyp3a71-ps

DIOPT Version :9

Sequence 1:NP_001259464.1 Gene:Cyp28c1 / 32138 FlyBaseID:FBgn0030339 Length:505 Species:Drosophila melanogaster
Sequence 2:XP_008767252.2 Gene:Cyp3a71-ps / 690383 RGDID:1597309 Length:183 Species:Rattus norvegicus


Alignment Length:134 Identity:21/134 - (15%)
Similarity:50/134 - (37%) Gaps:34/134 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 LLTNGRIRTTHAIMQRVCLDLCQFIAIKSAGGKDLDCIDLGLRFTGESLFDCVLGIQARTFTDNP 204
            :.|:|:::....|::.....|.:::..::..||.:...|:...::.:.:.....|:...:..:..
  Rat     1 MFTSGKLKVMFPIIKLYGDILVKYLRQEAEKGKPVSVKDIFGAYSMDVITSTSFGVNVDSLNNPK 65

  Fly   205 LPVVRQNHE-----------MSAENRGLAIAGAVHGLFPNLPRWLRP-------KVFPRSHDRFY 251
            .|.|.:..:           :|.|            |||    :|:|       .|||:....|:
  Rat    66 DPFVEKTKKFLRLDYFDPLFISVE------------LFP----FLKPIYDMLNISVFPKDSIAFF 114

  Fly   252 GQMI 255
            ...:
  Rat   115 KNFV 118

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp28c1NP_001259464.1 p450 35..487 CDD:299894 21/134 (16%)
Cyp3a71-psXP_008767252.2 cytochrome_P450 2..>153 CDD:425388 21/133 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D264519at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.