DRSC/TRiP Functional Genomics Resources

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Protein Alignment rudhira and ATG18H

DIOPT Version :9

Sequence 1:NP_001368979.1 Gene:rudhira / 32136 FlyBaseID:FBgn0266019 Length:2162 Species:Drosophila melanogaster
Sequence 2:NP_564664.1 Gene:ATG18H / 841912 AraportID:AT1G54710 Length:927 Species:Arabidopsis thaliana


Alignment Length:1034 Identity:239/1034 - (23%)
Similarity:387/1034 - (37%) Gaps:264/1034 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 KDTITWARFETCADVSDPRFGDDWELEGNAAPPLLLILGYGLGVQVWAIPANGEAVEVLSWRHGV 142
            ||.:.|:.|:. ...|:..|.:            :|:|||..|.||..|..:.:..|.:|.|...
plant    65 KDQVLWSSFDR-LHTSESSFKN------------VLLLGYTNGFQVLDIDDSNDVTEFVSRRDDP 116

  Fly   143 VTALRVLPTPATAAALDENGRADEPVDSFAEKRP-LVAFVDGGSAAASGLLAGSSGLGLGGGGGG 206
            ||.|::.|.||..          :.|:.|....| |:|..|...                |.|..
plant   117 VTFLQMQPLPAKC----------DGVEGFRSSHPILLAVADEAK----------------GSGPI 155

  Fly   207 VTTVGGSV--GGVSGIGVSASAQFSAVNFMSLKTGVQVKTIKFKNAVLDIQANRSAVVITFHERI 269
            ||:..|||  |....:.:|.    :.|.|.||::...|..::|::.|..::.:...|.:....:|
plant   156 VTSRDGSVRNGYEDPLALSP----TVVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLGSQI 216

  Fly   270 AVFDARTLEDRLTITTCYPSP--------GINP--NPIALGPRWLAYAEHKLLHS---KRSGGGC 321
            ..|||.|||::.::.: ||.|        |:|.  .|:|:|.||||||.:..|.|   :.|....
plant   217 YCFDALTLENKFSVLS-YPVPQLGNQGISGVNVGYGPMAVGARWLAYASNSPLSSSIGRLSPQNV 280

  Fly   322 DGEGVPSYTAT---------VLNAAKSLSKGLREFGE-------QVAAGLTGTTAGSGASSKSSS 370
            ...||...|:.         .:.::|.|:.||...|:       :....|.....|...||....
plant   281 TPPGVSPSTSPNNGNLVARYAMESSKHLAAGLLNLGDKGYKTISKYCQDLKHDGPGPSLSSSPGR 345

  Fly   371 FDSASGGPDAKQSGVVTIIDVKHPVKDYSPTSGTPLSSTAGSQGGGDPIVAHFVAHSEALVAMEF 435
            .....|...|:...|.|:|     |||:...:                |:|.|.||:..:.|:.|
plant   346 KVGRVGSHSAESDVVGTVI-----VKDFESRA----------------IIAQFRAHTSPISALCF 389

  Fly   436 DSSGMLLLTADRRGHDFHVFRVQPHPV--GPSL-----AAVH-HLYVLHRGDTSAKVQHIAFSLD 492
            |.||.||:||...|::.:|||:.|.|.  ||..     ::.| .||.||||.|||.:|.|.||..
plant   390 DPSGTLLVTASIHGNNINVFRIMPTPTKNGPGAQSYDWSSSHVPLYKLHRGMTSAVIQDICFSSY 454

  Fly   493 SRWAAVSTLRGTTHVFPITPYGGAMGVRTHTSLHVVNKLSRFHRSAGLGADGRSSSPISHSESTT 557
            |:|.|:.:.:.|.|::.::|:||      ...|.:.|  |:|        ||.:.:|        
plant   455 SQWIAIVSSKSTCHIYVLSPFGG------ENVLEIRN--SQF--------DGPTLAP-------- 495

  Fly   558 FVQSLQPYHNPTLPPYPRPSVVQPLAQLRQPFTLGSPPGSAGLGGGVGGGGVMGSGVSAGGHGVG 622
                     ..:||.:..||.:  ......|     ||.|..|           |.||.      
plant   496 ---------TLSLPWWSSPSFM--TTHFSYP-----PPASVTL-----------SVVSR------ 527

  Fly   623 VGVGSNSQRQRQRLSSLSDDSGKPL--SVC--SIFAKSRSWLLEPPMATREQPHRVQRKAVDSLF 683
              :..|:     ...:.|...|||.  |.|  ::|.:|     .|..:....|      |:|.|.
plant   528 --IKCNN-----FFHAASSVVGKPTFPSGCLAAVFHQS-----VPQESQSSSP------ALDYLL 574

  Fly   684 VMAGHGALIQYDLDTKLASHVAKEK--------ICDDTPIELEVEARAQWNLGRRKDGSQEIAPP 740
            |....|.::||.|...|....|:..        :..:..:.::||....|::.||.|..:.....
plant   575 VYTPSGHVVQYKLIPSLGGDQAESNTRNGATSGLTSEEELRVKVEPVQCWDVCRRADWPEREENI 639

  Fly   741 LGLDNWLIKDRHASLLLDSANQFDD--PDERTESWLAQVEIITHAGPHRRLWMGPQFVFKNYNTP 803
            .||...  ..::|.|.:|:::..|.  |.|:...:||..|::.::| .:.:|...:..|.....|
plant   640 CGLTYG--GRKNAELTVDTSDSEDQTKPLEKHHVYLANAEVLINSG-RKPIWQNSEISFYPMYPP 701

  Fly   804 --SGSNLN-HVDAEAVEIGVSKTTTTTLPSTAASSALGLGTIIGKDRSSPLNMPLSAATSVGGAG 865
              .|.||| |......|||          ..:|:..    .|..||.....:...|..||:...|
plant   702 DSDGKNLNSHQGGGETEIG----------KVSANEV----DIRRKDLLPVYDNFHSVYTSMRNRG 752

  Fly   866 IGSSAVTGRSGAGVPVLIESGSYSSIEQSPKLMDRFRHGHL------------------------ 906
            ......:..|.:..|..::.....:....|:..:|....|.                        
plant   753 FSGERDSDSSSSSDPGQVKEMHPFNGMVYPEDEERRGSAHFALTPNQNPHTGIVTFKQPVVSISS 817

  Fly   907 ---DSDYGHGDTRLKEDLADAMRESPSTAAARRETTAASVDQAAPPCGD-HLATGASPASADLLA 967
               |:||          :.|.....|..|:...||   .::.::...|| ::::..|..|.:...
plant   818 AVKDTDY----------IDDDAHVLPKNASLPAET---KIENSSGISGDSNVSSNRSDMSMNAAD 869

  Fly   968 AGAGG-SASSNCDNVCYYDALAEHESLNDLDEVVEDQHQHTDAETHLHSMDSISALASV 1025
            .|.|. ..|.|.:.  :::.:..:|:      |.|.:|:...::..|...:....|..|
plant   870 EGEGPIDGSPNFEQ--FFEEVVSNET------VTETEHKDAPSDGKLDDDEDDDMLGGV 920

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rudhiraNP_001368979.1 BCAS3 648..818 CDD:403626 42/184 (23%)
ATG18HNP_564664.1 WD40 <332..410 CDD:421866 27/98 (28%)
WD40 374..>470 CDD:421866 40/95 (42%)
WD40 repeat 385..439 CDD:293791 21/53 (40%)
WD40 repeat 446..489 CDD:293791 16/58 (28%)
BCAS3 517..729 CDD:403626 57/263 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 133 1.000 Domainoid score I1643
eggNOG 1 0.900 - - E1_KOG2109
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005577
OrthoInspector 1 1.000 - - otm3307
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13268
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3991
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.870

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