DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsc70-3 and hspa12a.3

DIOPT Version :9

Sequence 1:NP_001285139.1 Gene:Hsc70-3 / 32133 FlyBaseID:FBgn0001218 Length:656 Species:Drosophila melanogaster
Sequence 2:NP_001038346.3 Gene:hspa12a.3 / 559031 ZFINID:ZDB-GENE-030131-8896 Length:571 Species:Danio rerio


Alignment Length:603 Identity:128/603 - (21%)
Similarity:234/603 - (38%) Gaps:156/603 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 IGIDLGTTYSCVGV---YKNGRVEIIANDQGNRI------TPSYVAFTADGERLIGDAAKNQLTT 87
            |.||.||:||...:   .|..:..|...:.|...      ||:.:.|                  
Zfish     8 IAIDFGTSYSGYAISFKTKQPQESIQIPNWGVNFGYNTFKTPTCILF------------------ 54

  Fly    88 NPENTVF-----DAKRLIGREWSDTNVQHDIKF--FPFKVVEKNSKPHISVDTSQGAKVFAPEEI 145
             .|:..|     ||.....|....:..:....|  |..::.:|.....:.:....|.::.|....
Zfish    55 -DEHETFQKFGYDAMMTYTRSTPKSQARKSFLFEHFKMELYDKEIHRDLMITAKNGGQMKALTVF 118

  Fly   146 SAMV-------LGKMKE--TAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGVIAGLQV----MR 197
            |..:       |.|:||  |.:.::...||. |:||||.:|.|.:|..::|.:.|||.:    .|
Zfish   119 SESLRYLKDHALEKIKENTTGKTFIASDVTW-VLTVPAIWNAAAKQFMREAAIEAGLVIESEPER 182

  Fly   198 II--NEPTAAAI--------AY--------GLDKKEGEKNVLVFDLGGGTFDVSLLTI--DNGVF 242
            ::  .||.||:|        .|        .|::|.|.: .:|.|.||||.|:::..:  |..:.
Zfish   183 LVFALEPEAASIYCKQLPSEGYISEEACRDTLEQKPGTQ-YMVVDCGGGTIDITVHEVVEDGKLK 246

  Fly   243 EVVATNGDTHLGGEDFDQRVMDHFIKLYKKKKGKDIRKDNRA-VQKLRREVEKAKRALSGSHQVR 306
            |:.|.:|: .:||:..|::.:....:::.:|......:|..| ..||:.::..||   |....|.
Zfish   247 ELNAASGN-DMGGQTVDRKFISFLKEIFSEKIYNKFEQDFPAEALKLKYDIALAK---SCDQLVL 307

  Fly   307 IE--------------IESFFEG------DDFSETLTRAKFEELNLDLFRSTLKPVQKVLEDADM 351
            |:              |||:|||      |:.|..:...|.:....:..::|.:.::|::.:.::
Zfish   308 IQCPVTLQDLAKKEKAIESYFEGVEGAEWDEGSIIIKEDKLQSFFDESLKTTAEKLEKIMSNPEL 372

  Fly   352 NKKDVHEIVLVGGSTRIPKVQQLVKDFFGGKEPSRGINPDEAVAYGA---AVQAGVLSGEQDTDA 413
            |   :..::||||......:::.:|:.|...:....:.|...:..||   |.|..|:...     
Zfish   373 N---IEYMLLVGGFAECKILKKFLKERFDKCKIVCPVEPQVVIIKGAIRYAKQPKVVKSR----- 429

  Fly   414 IVLLDVNPLTMGIETVGGVMTKLIPR------------------NTVIPTKKS-------QVFST 453
                 ::.||.||. :.....|::.:                  .|.:...:|       |.|..
Zfish   430 -----MSALTYGIR-IDAPFDKVLHKGKTSYVNSEGQTYCDVCFETFVRKGESVNCDEVRQFFFN 488

  Fly   454 ASD-NQHTVTIQVYEGERPMTKDNHL----------LGKFDLTGIPPAPRGIPQIEVSFEIDANG 507
            .|| ||...|.|.:.     |.:..:          :|.|.: |:|....|:.: |:..||....
Zfish   489 PSDTNQTFATFQFFS-----TNEKQVQFIDEPGVESVGVFQV-GMPKTDGGLSR-EIKLEIKFGS 546

  Fly   508 I-LQVSAEDKGTGNKEKI 524
            . ::.:|.|..:|....:
Zfish   547 TEMKATATDVDSGETTSV 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsc70-3NP_001285139.1 HSPA5-like_NBD 29..403 CDD:212681 100/443 (23%)
PTZ00009 32..643 CDD:240227 128/603 (21%)
hspa12a.3NP_001038346.3 HSPA12_like_NBD 6..420 CDD:212671 98/439 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0443
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.