DRSC/TRiP Functional Genomics Resources

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Protein Alignment CkIIbeta and ckb1

DIOPT Version :9

Sequence 1:NP_996415.1 Gene:CkIIbeta / 32132 FlyBaseID:FBgn0000259 Length:235 Species:Drosophila melanogaster
Sequence 2:NP_001342935.1 Gene:ckb1 / 2542564 PomBaseID:SPAC1851.03 Length:231 Species:Schizosaccharomyces pombe


Alignment Length:220 Identity:123/220 - (55%)
Similarity:154/220 - (70%) Gaps:14/220 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SSEEVS-----WVTWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPNYRQALDMILD-LEPE-- 59
            |||..|     ||.||.||:|||||||||||:|||:||||||:.:||:|.|:||:||| |:|:  
pombe     5 SSESESDDSQYWVDWFLGLKGNEFFCEVDEDFIQDRFNLTGLSHEVPHYSQSLDLILDVLDPDLP 69

  Fly    60 DELEDNPLQSDMTEQAAEMLYGLIHARYILTNRGIAQMIEKYQTGDFGHCPRVYCESQPMLPLGL 124
            :|::|.      .|.:|..||||||||||||.:|:.:|:|||:..||||||||.|..|||||:||
pombe    70 EEVQDE------VEASARHLYGLIHARYILTAQGLYKMLEKYKKCDFGHCPRVLCNGQPMLPVGL 128

  Fly   125 SDIPGEAMVKTYCPKCIDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPTNQFVPRLYG 189
            |||.....||.|||:|.|||||||.||...|||||||.||||||.|:||....:...:::||::|
pombe   129 SDIAHTKSVKLYCPRCEDVYTPKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKSQERYIPRIFG 193

  Fly   190 FKIHSLAYQIQLQAAANFKMPLRAQ 214
            ||:||.:...:.|.....|...|.|
pombe   194 FKVHSYSATFKKQDVYKEKQKKRLQ 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CkIIbetaNP_996415.1 CK_II_beta 8..191 CDD:198153 112/190 (59%)
ckb1NP_001342935.1 SKB2 16..231 CDD:227374 119/209 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 243 1.000 Domainoid score I437
eggNOG 1 0.900 - - E1_COG5041
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55572
Inparanoid 1 1.050 252 1.000 Inparanoid score I776
OMA 1 1.010 - - QHG53662
OrthoFinder 1 1.000 - - FOG0001997
OrthoInspector 1 1.000 - - otm47317
orthoMCL 1 0.900 - - OOG6_100687
Panther 1 1.100 - - LDO PTHR11740
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R251
SonicParanoid 1 1.000 - - X1673
TreeFam 1 0.960 - -
1413.860

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