DRSC/TRiP Functional Genomics Resources

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Protein Alignment Karl and ptgdsb.1

DIOPT Version :9

Sequence 1:NP_001285137.1 Gene:Karl / 32131 FlyBaseID:FBgn0030334 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_998799.1 Gene:ptgdsb.1 / 336492 ZFINID:ZDB-GENE-030131-8436 Length:184 Species:Danio rerio


Alignment Length:214 Identity:41/214 - (19%)
Similarity:78/214 - (36%) Gaps:66/214 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LTAVLIIILDVLLAPVGANLWTRHNSNAYQTRRRSGPSNRCPKVGAIKNFDLERMMGCWHVVQYY 77
            :|:|::.:|.:||..|.|:                      ..|..:.:|||:::.|.|::|   
Zfish     1 MTSVVVKMLCLLLCAVFAS----------------------ADVMPMTDFDLQKVEGKWYLV--- 40

  Fly    78 ASTEELPEYACMRSHFSFSKED-----------QHITMNFSYIFAEDPLREKLVGNITWMIPKFQ 131
                   .:|.....|...|:|           |...::.||   .:...:.....:|::..|.:
Zfish    41 -------GFATNAKWFVSHKDDMKMGTAMLVPTQEGDLDLSY---SNLKSDGSCWRMTYLAKKTE 95

  Fly   132 EPG-------HWQHTEDIYEGIYNTYVLDTDYDTWGLVMHCAEKKKQPRYLSALLLSRKTSLADN 189
            .||       .|.:..|:       .|:|..:|.:. :.|..:.|.....:...|.||...:.|:
Zfish    96 TPGRFVFYSQRWGNDNDM-------RVVDAKFDEYA-IFHTIKTKGGVSEILNKLYSRTPEMVDD 152

  Fly   190 EISFLRGKLPQ-DIDTSFM 207
                |:.|..| .:||..:
Zfish   153 ----LKEKFRQFCLDTGIL 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KarlNP_001285137.1 None
ptgdsb.1NP_998799.1 Lipocalin 35..176 CDD:278490 30/158 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D558802at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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