DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9360 and rdh8b

DIOPT Version :9

Sequence 1:NP_572746.1 Gene:CG9360 / 32128 FlyBaseID:FBgn0030332 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_957082.2 Gene:rdh8b / 393761 ZFINID:ZDB-GENE-040426-1759 Length:317 Species:Danio rerio


Alignment Length:236 Identity:57/236 - (24%)
Similarity:101/236 - (42%) Gaps:57/236 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RVAVVTGASSGIG----AACCKDLVSKGLVVVGL--ARREDRL--------QELKASLPADQASR 57
            :|.::||.|||||    ....:|...:..|:..:  .:|:|:|        .:.......|..|.
Zfish     7 KVVLITGCSSGIGLGIAVMLARDKQQRYYVIATMRDLKRQDKLVCAAGDTYGKTLTVCTLDVCSN 71

  Fly    58 FHGRKC-DVSQEQEVIDAFAWIDATLGGADVLVNNAGIVRLG--VGITHEGNGADLRAILDTNVL 119
            ...|:| |..:::.:              |:|:||||:..:|  .|::.:    |:..:.:||..
Zfish    72 ESVRQCVDSVKDRHI--------------DILINNAGVGLVGPVEGLSLD----DMMKVFETNFF 118

  Fly   120 GVSWCTREAFKSLKRRNVNDGHILIVNSVAGHRVINNPGITMG-MYSPSKYAVTALTEVLRQEFH 183
            |.....:|....:|:|  ..|||::::||.|.:     |:... :|:.||:|:....|.|..:. 
Zfish   119 GAVRMIKEVMPDMKKR--RSGHIIVISSVMGLQ-----GVAFNDVYAASKFAIEGFCESLAVQL- 175

  Fly   184 NNKTQTKITSISPGAVDTEIIDKEALVGIPDFPMLRSEDVA 224
             .|....::.|.||.|.||            |.|...:||:
Zfish   176 -LKFNVTMSMIEPGPVHTE------------FEMKMYDDVS 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9360NP_572746.1 YdfG 1..250 CDD:226674 57/236 (24%)
NADB_Rossmann 1..246 CDD:304358 57/236 (24%)
rdh8bNP_957082.2 type1_17beta-HSD-like_SDR_c 7..264 CDD:187666 57/236 (24%)
adh_short 7..202 CDD:278532 55/233 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1880
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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