DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9360 and rdh8a

DIOPT Version :9

Sequence 1:NP_572746.1 Gene:CG9360 / 32128 FlyBaseID:FBgn0030332 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_957001.1 Gene:rdh8a / 280648 ZFINID:ZDB-GENE-021115-3 Length:318 Species:Danio rerio


Alignment Length:273 Identity:71/273 - (26%)
Similarity:115/273 - (42%) Gaps:72/273 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RVAVVTGASSGIG----AACCKDLVSKGLVVVGL--ARREDRLQELKAS--------LPADQASR 57
            :|.::||.|||||    ....:|...:..|:..:  .:::|||.|....        ||.|..|.
Zfish     8 KVVLITGCSSGIGLRIAVLLARDEQKRYHVIATMRDLKKKDRLVEAAGEVYGQTLTLLPLDICSD 72

  Fly    58 FHGRKCDVSQEQEVIDAFAWIDATLGGADVLVNNAGIVRLG--VGITHEGNGADLRAILDTNVLG 120
            ...|:|..|.:...|             |||:||||:..||  ..|:.:    :::.:.:||..|
Zfish    73 ESVRQCVNSVKDRHI-------------DVLINNAGVGLLGPVESISMD----EMKRVFETNFFG 120

  Fly   121 VSWCTREAFKSLKRRNVNDGHILIVNSVAGHR--VINNPGITMGMYSPSKYAVTALTEVLRQEFH 183
            .....:|....:|:|..  |||:|::||.|.:  |.|:      :|:.||:|:....|.:..:. 
Zfish   121 TVRMIKEVMPDMKKRQA--GHIIIMSSVMGLQGVVFND------VYTASKFAIEGFCESMAVQL- 176

  Fly   184 NNKTQTKITSISPGAVDTEIIDKEALVGIPDFPMLRSEDVA---------DAISYC--IQTPPNV 237
             .|...|::.|.||.|.||            |.....|:||         |.:.|.  :..|.::
Zfish   177 -LKFNVKLSLIEPGPVHTE------------FETKMMEEVAKMEYPGADPDTVRYFKDVYVPSSI 228

  Fly   238 QIHELTIKPVGET 250
            .|.|    .:|:|
Zfish   229 DIFE----AMGQT 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9360NP_572746.1 YdfG 1..250 CDD:226674 70/271 (26%)
NADB_Rossmann 1..246 CDD:304358 69/267 (26%)
rdh8aNP_957001.1 type1_17beta-HSD-like_SDR_c 8..265 CDD:187666 71/273 (26%)
adh_short 8..207 CDD:278532 64/237 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1205
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1880
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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