DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prtp and pdi-1

DIOPT Version :9

Sequence 1:NP_001188583.1 Gene:prtp / 32124 FlyBaseID:FBgn0030329 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_497746.1 Gene:pdi-1 / 175472 WormBaseID:WBGene00003962 Length:485 Species:Caenorhabditis elegans


Alignment Length:509 Identity:129/509 - (25%)
Similarity:219/509 - (43%) Gaps:125/509 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LSVAVCGLLLSPLLPITRASQEEDTGKQDKQFTVELDPETFDTAIAGGN-VFVKFFAPWCGHCKR 70
            |||:...||::.:..:.          .|.:..:.|....|:..|.|.. |.|||:||||.|||.
 Worm     3 LSVSFIFLLVASIGAVV----------ADSENVLVLTESNFEETINGNEFVLVKFYAPWCVHCKS 57

  Fly    71 IQPLWEQLAEIMNVDNPKVIIAKVDCTKHQGLCATHQVTGYPTLRLFKLGEEESVKFKGTRDLPA 135
            :.|.:::.|:::..:...:.:||||.|::|.|.:..:|.||||:..||.|  :..|:.|.|....
 Worm    58 LAPKYDEAADLLKEEGSDIKLAKVDATENQALASKFEVRGYPTILYFKSG--KPTKYTGGRATAQ 120

  Fly   136 ITDFINKELSAP----------------------------AEADLGEVKREQVENLN-------- 164
            |.|::.|: |.|                            |::|...:..|..::::        
 Worm   121 IVDWVKKK-SGPTVTTVESVEQLEELKGKTRVVVLGYFKDAKSDAATIYNEVADSVDDAFFAVAG 184

  Fly   165 ---IGKVVDLTED---------------TFAKHVSTGNHFVKFFAPWCSHCQRLAPTWE---DLA 208
               :.....|.||               |.|:...|....:|   .|. |..:|:...|   :.|
 Worm   185 SAEVAAAASLNEDGVALIRTDGDDSETSTIAEAEITNTIALK---QWL-HAYKLSAVTEFTHESA 245

  Fly   209 KELI-----KEPTVTISKIDCT------QFRSICQDFEVKGYPTLL--WIEDGKKIEKYSGARDL 260
            :|::     |...:.|.|.|.:      :|..:.:.|..|....||  .:|:..:|.::.|   :
 Worm   246 QEIVGGDLKKFHFLIIRKSDSSFDETIAKFTEVAKKFRAKIVFVLLDVDVEENARILEFLG---V 307

  Fly   261 STLKTYVEKMVGV--PLEKTAGEAGDEKVVIEEVAGEEDAAKKLTPQQLTGED------------ 311
            ....|...::|.:  .:||...:.|::.........|..:|:.|..|.|. ||            
 Worm   308 DAKNTPANRIVSLADQVEKFKPQEGEDFEAFTNSYLEGKSAQDLKAQDLP-EDWNALPVKVLVAS 371

  Fly   312 EFDQ-AIAE-GVAFIKFYAPWCGHCQKLQPTWEQLATETHQAQSSVKIAKVDCTAPENKQVCIDQ 374
            .|:: |:.| ...|:||||||||||::|.|.|::|| |.:::..:|.|||:|.|..|    ..|.
 Worm   372 NFNEIALDETKTVFVKFYAPWCGHCKQLVPVWDELA-EKYESNPNVVIAKLDATLNE----LADV 431

  Fly   375 QVEGYPTLFLYKNGQRQN-EYEGSRSLPELQAYLKKFLG-----------HDEL 416
            :|..:|||.|:..|.... :|:|.|:|.:.:.::.|:.|           |:||
 Worm   432 KVNSFPTLKLWPAGSSTPVDYDGDRNLEKFEEFVNKYAGSASESETASQDHEEL 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prtpNP_001188583.1 PDI_a_ERp46 38..140 CDD:239303 37/102 (36%)
ER_PDI_fam 39..409 CDD:273457 118/457 (26%)
PDI_a_ERp46 167..267 CDD:239303 26/130 (20%)
PDI_a_ERp46 303..407 CDD:239303 42/118 (36%)
pdi-1NP_497746.1 ER_PDI_fam 23..474 CDD:273457 120/466 (26%)
pdi_dom 28..129 CDD:273454 38/103 (37%)
PDI_b_family 133..211 CDD:239279 6/77 (8%)
PDI_b'_family <263..343 CDD:239280 15/82 (18%)
PDI_a_PDI_a'_C 364..465 CDD:239293 38/105 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164188
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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