DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp10D and TNR

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:NP_003276.3 Gene:TNR / 7143 HGNCID:11953 Length:1358 Species:Homo sapiens


Alignment Length:1178 Identity:262/1178 - (22%)
Similarity:440/1178 - (37%) Gaps:282/1178 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   237 WQPPYPAGIYTHYKVSIEPPDANDSVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTMSEDEIS 301
            |..|...   |.|.:|.:|.......|.....|:..|   .....|.||..|||||..:..:.:|
Human   346 WDGPMAV---TEYVISYQPTALGGLQLQQRVPGDWSG---VTITELEPGLTYNISVYAVISNILS 404

  Fly   302 LPTTAQYRTVPLRPLNVTFDRDFITSNSFRVLWEAPKGISEFDKYQVSVATTRRQSTVPRSNE-- 364
            ||.||:..|....|..:.|..  ||..:..|.|| |...| ||.:::|.        :|::||  
Human   405 LPITAKVATHLSTPQGLQFKT--ITETTVEVQWE-PFSFS-FDGWEISF--------IPKNNEGG 457

  Fly   365 -----PVAFFDFRDIA-EPGKTFNVIVKTVSGKVTSWPATGDV-TLRPLPVRNLRSINDDKTNTM 422
                 |.....|.... :||:.:.|.|..:..:..|.|.:..| |:...|.:.|  :.|......
Human   458 VIAQVPSDVTSFNQTGLKPGEEYIVNVVALKEQARSPPTSASVSTVIDGPTQIL--VRDVSDTVA 520

  Fly   423 IITWEADPASTQDEYRIVYHELETFNGDTST--LTTDRTRFTLESLLPGRNYSLSVQAVSKKMES 485
            .:.|  .|...:.::.::.:.|....|..:|  |....:::::::|.||..|.:||.||....||
Human   521 FVEW--IPPRAKVDFILLKYGLVGGEGGRTTFRLQPPLSQYSVQALRPGSRYEVSVSAVRGTNES 583

  Fly   486 NETSIFVVTRPSSPIIEDLKSIRMG------LNISWKSDVNSKQE--QYEVLYSRNGTSDLRTQK 542
            :..:....|...:|     |::|:|      |::.|.   ||:.|  :|:|:|     |.|..::
Human   584 DSATTQFTTEIDAP-----KNLRVGSRTATSLDLEWD---NSEAEVQEYKVVY-----STLAGEQ 635

  Fly   543 TKE----------SRLVIKNLQPGAGYELKVFAVSHDLRSEPHAYFQAVYPNPPRNMTIETVRSN 597
            ..|          :|..:.:|.||..|.:.:.||.:..:|.|.........:.||::.:......
Human   636 YHEVLVPRGIGPTTRATLTDLVPGTEYGVGISAVMNSQQSVPATMNARTELDSPRDLMVTASSET 700

  Fly   598 SVLVHWSPPESGEFTEYSIRYRTDSE-QQWVRLPSVRSTEADITDMTKGEKYTIQVNTVSFGVES 661
            |:.:.|: ..||....|.|.:...|. ...|.:|..| |...:||:..|.:|.|.| |...|.:.
Human   701 SISLIWT-KASGPIDHYRITFTPSSGIASEVTVPKDR-TSYTLTDLEPGAEYIISV-TAERGRQQ 762

  Fly   662 PVPQEVNTTVPPNPVSNI-IQLVDSRNITLEWPKPEGRVESYILKWWPSDNPGRVQTKNVSENKS 725
            .:...|:......|:|:: ...|.|.::.:.|..|....:..||.:.|.|....:.      ..|
Human   763 SLESTVDAFTGFRPISHLHFSHVTSSSVNITWSDPSPPADRLILNYSPRDEEEEMM------EVS 821

  Fly   726 ADDLSTVRVLIGELMPGVQYKFDI-----QTTSYGILSGITS-LYPRTMPLIQSDVVVANGEKED 784
            .|......||:| |.|..:|..::     ..||..|:..||: :.|      ..|:.::|..|  
Human   822 LDATKRHAVLMG-LQPATEYIVNLVAVHGTVTSEPIVGSITTGIDP------PKDITISNVTK-- 877

  Fly   785 ERDTITLSYTPTPQSSSKFDIYRFSLGDAEI-RDKEKLANDTDRKVTFTGLVPGRLYNITVWTVS 848
              |::.:|::| |.:|  ||.||.|....:: |....:..:|..:.|.|.|.|...|.|::.:|.
Human   878 --DSVMVSWSP-PVAS--FDYYRVSYRPTQVGRLDSSVVPNTVTEFTITRLNPATEYEISLNSVR 937

  Fly   849 GGVASLPIQRQDRL-------YPEPITQLHATNITDTEISLRWDLPKGEYNDFDIAY----LTAD 902
            |.      :..:|:       ...|: .|.|||||.||..|:|..|.||..::.|..    :..:
Human   938 GR------EESERICTLVHTAMDNPV-DLIATNITPTEALLQWKAPVGEVENYVIVLTHFAVAGE 995

  Fly   903 NLLAQNMTTRNEITISDLRPHRNYTFTVVVRSGTESSVLRSSSPLSASFTTNEAVPGRVERFHPT 967
            .:|...::  .|..:.||.|..:||.|:...:|.     .:|..:|.:|:|....|..:.   .:
Human   996 TILVDGVS--EEFRLVDLLPSTHYTATMYATNGP-----LTSGTISTNFSTLLDPPANLT---AS 1050

  Fly   968 DVQPSEINFEWSLPSSEANGVIRQFSIAYTNINNLTDAGMQDF--ESEEAFGVIKNLKPGETYVF 1030
            :|........|..|.:|    |..:.:.|.:    ||...::.  ::|:.:..::.|.....|..
Human  1051 EVTRQSALISWQPPRAE----IENYVLTYKS----TDGSRKELIVDAEDTWIRLEGLLENTDYTV 1107

  Fly  1031 KIQA----------KTAIGFGPEREYRQTMPILAPPRPATQ----------VVP----------T 1065
            .:||          .||...|..        :...|:...|          |.|          .
Human  1108 LLQAAQDTTWSSITSTAFTTGGR--------VFPHPQDCAQHLMNGDTLSGVYPIFLNGELSQKL 1164

  Fly  1066 EVYRSSSTI---QIRFRKNYFSDQNGQVRMYTIIVAEDDAKNASGLEMPSWLDVQSYSVWLPYQA 1127
            :||...:|.   .|.|::.    ||||...:.                 .|.|   |.|      
Human  1165 QVYCDMTTDGGGWIVFQRR----QNGQTDFFR-----------------KWAD---YRV------ 1199

  Fly  1128 IDPYYPFENRSVED-FTIGTENCDNHKIGYCNGPLKSGTTYRVKV-------RAFTGADKFTDTA 1184
                 .|.|  ||| |.:|.:|.  |:|       .|...|.::|       .||...|:|    
Human  1200 -----GFGN--VEDEFWLGLDNI--HRI-------TSQGRYELRVDMRDGQEAAFASYDRF---- 1244

  Fly  1185 YSFPIQTDQDNTSLIVAITVPLTIILVLLVTLLFYKRRRNNCRKTTKDSRANDNMSLPDSVIEQN 1249
                  :.:|:.:|                    ||.|..:...|..|| .:.:...|.|..:::
Human  1245 ------SVEDSRNL--------------------YKLRIGSYNGTAGDS-LSYHQGRPFSTEDRD 1282

  Fly  1250 RPILIKNFAEHYR------------LMSADSDFRFSEEFEELKHVGRDQPCTFADLPCNRPKNRF 1302
            ..:.:.|.|..|:            |.....:.|.|:........|.:....|.::         
Human  1283 NDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGINWYHWKGHEFSIPFVEM--------- 1338

  Fly  1303 TNILPYDH 1310
             .:.||:|
Human  1339 -KMRPYNH 1345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470
fn3 220..304 CDD:278470 19/66 (29%)
fn3 315..391 CDD:278470 21/83 (25%)
FN3 405..494 CDD:238020 19/90 (21%)
FN3 511..574 CDD:238020 19/74 (26%)
FN3 583..671 CDD:238020 22/88 (25%)
fn3 683..753 CDD:278470 16/74 (22%)
fn3 787..850 CDD:278470 19/63 (30%)
fn3 866..935 CDD:278470 23/72 (32%)
fn3 961..1043 CDD:278470 16/93 (17%)
PTPc 1272..1525 CDD:214550 6/39 (15%)
PTPc 1298..1525 CDD:238006 3/13 (23%)
TNRNP_003276.3 EGF_2 <208..230 CDD:285248
EGF_2 267..292 CDD:285248
EGF_2 299..323 CDD:285248
fn3 328..398 CDD:278470 17/57 (30%)
fn3 416..496 CDD:278470 22/91 (24%)
fn3 505..583 CDD:278470 17/81 (21%)
FN3 595..679 CDD:238020 24/96 (25%)
fn3 687..766 CDD:278470 21/81 (26%)
fn3 776..855 CDD:278470 20/85 (24%)
fn3 865..944 CDD:278470 24/97 (25%)
fn3 954..1026 CDD:278470 23/74 (31%)
FN3 1042..1127 CDD:238020 16/95 (17%)
FReD 1133..1342 CDD:238040 52/295 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.