DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp10D and epha4b

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:NP_705944.1 Gene:epha4b / 64270 ZFINID:ZDB-GENE-030826-6 Length:976 Species:Danio rerio


Alignment Length:744 Identity:139/744 - (18%)
Similarity:241/744 - (32%) Gaps:257/744 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   864 PE-PITQLHATNITDTEISLRWDLPKGEYNDFDIAY------LTADNLLAQNMTTR--------- 912
            || ||:.|:     ||.::|.|..|:......|:.|      ...|..:....:..         
Zfish   331 PENPISTLN-----DTSVTLEWSPPRDSGGRGDVTYSIHCRKCAGDGRICSPCSNNVHFVPRQFG 390

  Fly   913 ---NEITISDLRPHRNYTFTVVVRSGTESSVLRSSSPLSASFTTNEAVPGRVERFHPTDVQPSEI 974
               .::.|:||..:.||||:|...:|...........::.:.||::.|...::.....|    .|
Zfish   391 LSIPKVLITDLLSNTNYTFSVEAVNGVSDLSPTPKQLVTVNITTSQTVNVILKERKSKD----SI 451

  Fly   975 NFEWSLPSSEANGVIRQFSIAYTNINNLTDAGMQDFESEEAFGVIKNLKPGETYVFKIQAKTAIG 1039
            ...|..| ...||||.::.:.|.. .|..|......:::.....::.||||.||||:::|:|..|
Zfish   452 TLAWQGP-DRPNGVIVEYEVIYYE-KNQRDQNYTVLKTKGHMMTVEGLKPGTTYVFRVRARTDGG 514

  Fly  1040 FGP-------EREYRQTMPILAPPRPATQVVPTEVYRSSSTIQIRFRKNYFSDQNGQVRMYTIIV 1097
            :|.       |..:...:.|..|             ..|:.:.:...        |.:.:.|.:|
Zfish   515 YGNYGGEIELETSHEDMLAIGGP-------------NQSTILAVSIA--------GGIVLLTFLV 558

  Fly  1098 A-----------------EDDAKNASGLEMPSWLDVQSYSVWLPYQA--IDPY-YPFENRSVEDF 1142
            |                 .|:.|          :..|:..|.||...  |.|: |...|::|.||
Zfish   559 ACFVVSGRHCGYIKAKQDPDEEK----------MQFQNGRVKLPGSRTYIHPHTYEDPNQAVRDF 613

  Fly  1143 -------TIGTENCDNHKIG------YCNGPLKSGTTYRVKVRAFTGADKFTDTAYSFPIQTDQD 1194
                   ||..|..    ||      .|:|.||..:...:.|     |.|.....||        
Zfish   614 AKEIDASTIRIERV----IGAGEFGEVCSGRLKLPSKREIYV-----AIKSLKAGYS-------- 661

  Fly  1195 NTSLIVAITVPLTIILVLLVTLLFYKRRRNNCRKTT-KDSRANDNMSLPDSVIEQNRPILIKNFA 1258
                                    .|:||:...:.: .....:.|:...:.|:.:.:|::|  ..
Zfish   662 ------------------------EKQRRDFLSEASIMGQFDHPNIIRLEGVVTRCKPVMI--IT 700

  Fly  1259 EHYRLMSADSDFRFSE-EFEELKHVG------------RDQPCTFADLPCNRPKNRFTNILPYDH 1310
            |:....|.|:..:..: :|..::.||            .|......||...       |||...:
Zfish   701 EYMENGSLDTFLKKHDGQFTVIQLVGMMRGIASGMKYLSDMSYVHRDLAAR-------NILVNSN 758

  Fly  1311 -----SRFKLQPV--DDDEGSDYINANYVPGHNSPREFIVTQGPLHSTRDDFW------------ 1356
                 |.|.|..|  ||.|.:.......:|...:..|.|..:  ..::..|.|            
Zfish   759 LVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYR--KFTSASDVWSYGIVMWEVISY 821

  Fly  1357 --RMCWESNSRAIV---------------------MLTRCFEKGREKCDQYWPNDTVPVFYGDIK 1398
              |..||.:::.::                     ::..|:||.|.:..::.             
Zfish   822 GERPYWEMSNQDVIKAIDEGYRLPAPMDCPVVLHQLMLDCWEKSRSERPKFG------------- 873

  Fly  1399 VQILNDSHYADWVMTEFMLCRGSEQRILRH-------FHFTTWPDFGVPNPPQTLVRFVRAFRDR 1456
             ||:|                 :..:::|:       .:.:.|.|   |..|:..|..|..:.|.
Zfish   874 -QIVN-----------------TLDKLIRNPNSLKELANSSVWED---PTTPEFSVSTVDEWLDA 917

  Fly  1457 IGAEQRPIVVHCSAGVGRSGTFITLDRIL 1485
            |...|      .......:| :::||.||
Zfish   918 INMGQ------YKDNFANAG-YVSLDSIL 939

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470
fn3 220..304 CDD:278470
fn3 315..391 CDD:278470
FN3 405..494 CDD:238020
FN3 511..574 CDD:238020
FN3 583..671 CDD:238020
fn3 683..753 CDD:278470
fn3 787..850 CDD:278470
fn3 866..935 CDD:278470 19/86 (22%)
fn3 961..1043 CDD:278470 23/88 (26%)
PTPc 1272..1525 CDD:214550 46/276 (17%)
PTPc 1298..1525 CDD:238006 40/237 (17%)
epha4bNP_705944.1 EphR_LBD_A 31..203 CDD:198441
FN3 328..434 CDD:238020 22/107 (21%)
FN3 447..526 CDD:238020 23/84 (27%)
EphA2_TM 546..617 CDD:291255 17/88 (19%)
PTKc_EphR_A 617..883 CDD:270651 55/348 (16%)
Pkinase_Tyr 622..879 CDD:285015 54/339 (16%)
SAM_EPH-R 907..967 CDD:188887 10/40 (25%)
SAM 907..967 CDD:197735 10/40 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I11636
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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