DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp10D and ptprz1b

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:XP_009298311.1 Gene:ptprz1b / 553019 ZFINID:ZDB-GENE-050506-100 Length:1457 Species:Danio rerio


Alignment Length:1456 Identity:338/1456 - (23%)
Similarity:535/1456 - (36%) Gaps:467/1456 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   392 VTSWPATGDVTLRPLPVRNLRSINDDKTNTMIITWEADPASTQDEYRIVYHELETFN-----GDT 451
            |..:|..|:....|:      .|:::.|                :.|:.|..|:..|     .|:
Zfish    52 VKKYPVCGNARQSPI------DISEEFT----------------QVRLQYQNLQLENWEQPTTDS 94

  Fly   452 STLTTD-------------------RTRFTL-----------------ESLLPGRNYSLSVQ--- 477
            :|:|.|                   |:||.:                 |..|.|..:.|.:|   
Zfish    95 TTITNDGKTVVIGLNSEYFISGGGLRSRFKVGRITFHWGRCNATSDGSEHSLNGNRFPLEMQIYC 159

  Fly   478 -------AVSKKMESNE--TSIFVVTRPSSPIIEDLKSIRMGLNISWKSDVNSKQEQYEVL---- 529
                   ::.:.|.|..  .::.|:...|....:|..:|..|:|...:...:|..|::.:|    
Zfish   160 FDDLEFESIDEAMSSGGKIAAVAVLFEASIEDNQDYAAIIEGVNNVSRFGKSSAVEEFSLLALLP 224

  Fly   530 ------YSRNGTSDLRTQKTKESRLVIKN-----------------LQPGAGYELKVFAVSHDLR 571
                  :..||:............:|.||                 :|. |||.:....:.::.|
Zfish   225 ENTEKYFMYNGSLTAPPCSENVEWIVFKNTVGISETQLEVFCEVMTIQQ-AGYAMLTDYLQNNYR 288

  Fly   572 SEPHAYFQAVY---------PNP-----PRNMTIETVRSNSVLVHWSPPESGEFT---EYSIRY- 618
            .:...:...|:         |.|     |:|:..::.....::|.|..|.:...|   .||:.| 
Zfish   289 EQQQQFMGQVFSSYTGTEEVPAPMCSSEPQNVQADSQNFTGIVVTWERPRAVYDTVIERYSVTYQ 353

  Fly   619 ----RTDSEQQWVRLPSVRSTEAD------ITDMTKGEKYTIQVNTVSF-GVESPVPQEVNTTVP 672
                :...:||::       |:.|      |.::.....|.:||..:.. |:...:..:|...:|
Zfish   354 RLQGQNPPKQQYL-------TDGDQDVGAIIHNLLANSSYVVQVVALCMNGLTGKMSDQVIVDMP 411

  Fly   673 -PNPVSNIIQLVDSRNITLEWPKPEGRV---ESYILKWW--PSDN--PGRVQTKNVSENKSADDL 729
             .:||:.              |.|.|.:   |.|..:..  ||..  |||...:        |..
Zfish   412 FEDPVNE--------------PDPYGDLAESEEYNEEHTSAPSSKPPPGRFLIR--------DSG 454

  Fly   730 STVRVLIGELMPGVQYKFDIQTTSYGILSGITSLYP--RTMPLIQSDVVVANGEKEDERDTITLS 792
            |::.:......||.                   |:|  ||.|                   ||:.
Zfish   455 SSISITTSTDQPGF-------------------LFPVSRTTP-------------------ITVR 481

  Fly   793 YTPTPQSSSKFDIYRFSLGDAEIRDKEKLANDTDRKVTFTGLVP---GRL-YNITVWTVSGGVAS 853
            ...|.:|         ||....:::|.: .|:|.|..  ..|:|   |.. .:.||.|       
Zfish   482 RKITEES---------SLSQPPVQNKSR-KNETKRPA--NRLLPDDSGHFPQSNTVVT------- 527

  Fly   854 LPIQRQDRLYPEPITQLHATNITDT-EISLRWDL---------PKGEYNDFDIAYLTADNLLAQN 908
                   .:|.|.:.....||||.| ..:|..|.         ||...|:...|..|..:.|:.:
Zfish   528 -------DVYYEDVLNSSTTNITPTINNNLLIDQNTEKASTSPPKQPANESSTANATTGSSLSAS 585

  Fly   909 MTTRNEITISDLRPHRNYTFTVVVRSGTE-------SSVLRSSSPLSASFTTNEAVPGRVERFHP 966
            |...::.|    :|..|..|........|       ::.|..||..|.:....|.    ...|.|
Zfish   586 MKIISQTT----QPLFNDVFVTATSFNNERVLMVSDATSLYESSTRSPTIILEEG----SAHFPP 642

  Fly   967 TDVQP-----------SEINFEWSLPSSEANGVIRQFSIAYTNINNLTDAGMQDFESEEAFGVIK 1020
            :|.|.           .|::.||.|                                |:.....|
Zfish   643 SDGQGEFSGSGSAIFLEELDREWEL--------------------------------EQTRTAPK 675

  Fly  1021 NLKPGETYVFKIQAKTAIGFGPEREYRQTMPILAPPRPATQVVPTEVYRSSSTIQIRFRKNYFSD 1085
            |..|.:|               :.|..:.:       |:|....:|...||:          :..
Zfish   676 NADPRKT---------------QEENHEGL-------PSTFFFESEREASST----------YKP 708

  Fly  1086 QNGQVRMYTIIVAEDDAKNASGLEMPSWLDVQSYSVWLPYQAIDPYYPFENRSVEDFTIGTENCD 1150
            ||.....:....||.|:.:..|..|.|..:.      :|.|.|.|..   |...|:....:.:..
Zfish   709 QNQDFLSWVTWSAESDSGSGQGGSMISQTED------IPIQLIIPKL---NIQEENHAEASNSSP 764

  Fly  1151 NHKIGYCNGPLKSGTTYRVKVRAFTGADKFTDTAYSFPIQTDQDNTSLI-VAITVPLTII-LVLL 1213
            ..::|...|                               |:.:..::: :||...||:: ||:|
Zfish   765 ESRVGMVGG-------------------------------TETEKRAVVPLAIVSTLTVLCLVVL 798

  Fly  1214 VTLLFYKRRRNNCRKT----TKDSRANDNMSLPDSVI----EQNRPILIKNFAEHYRLMSADSDF 1270
            |.:|.|.||   |.:|    .:|:.:...:|.|.:.:    |.|..:.:|:|.:|  :....::.
Zfish   799 VGILIYWRR---CFQTAHFYVEDTNSARAISAPSTPLLLPTEDNEALPVKDFVKH--VADLHANH 858

  Fly  1271 RFSEEFEELKHVGRD-QPCTFADL---------PCNRPKNRFTNILPYDHSRFKLQPVDDDEG-- 1323
            :||:|||.||....: |.|| ||:         |.|:.|||:.|||.|||||.||....|.:|  
Zfish   859 KFSKEFEILKESYEEIQGCT-ADMGITTDSSNHPDNKSKNRYINILAYDHSRVKLSQNSDKDGKT 922

  Fly  1324 SDYINANYVPGHNSPREFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPND 1388
            .||||||||.|.|.|:.:|..||||..:.:|||||.||.|...|||:|...||||.|||||||.:
Zfish   923 GDYINANYVDGFNQPKAYIAAQGPLKGSLEDFWRMIWEQNVGVIVMITNLVEKGRRKCDQYWPLE 987

  Fly  1389 TVPVFYGDIKVQILNDSHYADWVMTEFML---------CRG-SEQRILRHFHFTTWPDFGVPNPP 1443
            . ...||...|.:.:....|.:.:..|.|         .:| |::|.:.|||:|.|||.|||...
Zfish   988 N-QEDYGCFLVTLKSSRTLAYYTLRTFTLRNVQIKKGSQKGRSQERTVLHFHYTQWPDMGVPEYT 1051

  Fly  1444 QTLVRFVRAFRDRIGAEQRPIVVHCSAGVGRSGTFITLDRILQQINTSDYVDIFGIVYAMRKERV 1508
            ..|:.|:|.......||..|:||||||||||:||:|.:|.:|:||...:.|:|.|.:..:|.:|.
Zfish  1052 LPLLSFIRTSSQARTAEMGPVVVHCSAGVGRTGTYIVIDSMLKQIKEENTVNIMGFLKHIRTQRN 1116

  Fly  1509 WMVQTEQQYICIHQCLLAVLEGKENIV---------------GPAREMHDNEGYEGQQVQLDENG 1558
            ::||||:||:.||..|:..:..||.:|               |||.:....:.::.......:..
Zfish  1117 YLVQTEEQYVFIHDALVEAIRSKETLVSSSLIHTYVSGLLTPGPAGKTPLEKQFKLVSQSCAKQS 1181

  Fly  1559 DVVATI-EGHLSHH-------------DLQQAEAEAIDDENAAIL---HDD------QQPLTSS- 1599
            |....: |.::|.:             .|..|..|:.|..||:.|   |..      |.||.:: 
Zfish  1182 DYTTALKESNVSKNRTACLMPVERSRVSLSAAAGESSDYINASYLLGFHQSREFIVTQNPLPNTI 1246

  Fly  1600 ------FTGHHTH----MPPTTSMSS 1615
                  ...|:|.    :|.|.:|||
Zfish  1247 HDFWRMIWDHNTQIIVSLPDTHNMSS 1272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470
fn3 220..304 CDD:278470
fn3 315..391 CDD:278470
FN3 405..494 CDD:238020 22/141 (16%)
FN3 511..574 CDD:238020 14/89 (16%)
FN3 583..671 CDD:238020 21/107 (20%)
fn3 683..753 CDD:278470 14/76 (18%)
fn3 787..850 CDD:278470 16/66 (24%)
fn3 866..935 CDD:278470 18/78 (23%)
fn3 961..1043 CDD:278470 13/92 (14%)
PTPc 1272..1525 CDD:214550 123/274 (45%)
PTPc 1298..1525 CDD:238006 109/238 (46%)
ptprz1bXP_009298311.1 alpha_CARP_receptor_like 47..300 CDD:239396 44/270 (16%)
fn3 315..393 CDD:278470 17/84 (20%)
PTPc 859..1134 CDD:214550 124/276 (45%)
PTPc 896..1134 CDD:238006 110/238 (46%)
PTPc 1166..1424 CDD:214550 21/107 (20%)
PTPc 1194..1424 CDD:238006 18/79 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3031
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.940

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