DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp10D and Ptpro

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:NP_059032.1 Gene:Ptpro / 50677 RGDID:62068 Length:1216 Species:Rattus norvegicus


Alignment Length:1548 Identity:378/1548 - (24%)
Similarity:568/1548 - (36%) Gaps:533/1548 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 SNLSVQVRSGKNAII-LWSPPTQGSYTAFKIKVLGLSEASSSYNRTFQVNDNTFQHSVKELTP-- 188
            |...|.||...|.:: |.:.......:.:.::|.|     .|.|..|:     |:.|...|.|  
  Rat    28 STFHVTVRDDNNIVVSLEASDVVSPTSVYVVRVAG-----ESKNYFFE-----FEESNGTLPPPV 82

  Fly   189 --GATYQVQAYTIYDGKESVAYTSRNFTTKPNTPGKFIVWFRNETTLL----------------- 234
              .|||....|.|     |:...|.|..|||:         |:.|.|.                 
  Rat    83 VFKATYHGLYYII-----SLVVVSGNVVTKPS---------RSITVLTKPLPVTSVSIYDYKPSP 133

  Fly   235 ---VLWQPPYPAGIYTHYKVSIEPPDAND--SVLYVE-KEGEPPGPAQAAFKGLVPGRAY-NISV 292
               ||::..||.......:|:|...:..|  ::||.: .:|      :..|...:||..| ||:.
  Rat   134 ETGVLFEIHYPEKYNVFSRVNISYWEGKDFRTMLYKDFLKG------KTVFNHWLPGICYSNITF 192

  Fly   293 QTMSEDEISLPTTA----------QYRTVPLRPLNVTFDRDFITSNSFRVLWEAPKGI---SEFD 344
            |.:||...:..|..          |:||.|..|.|::.  .|:..|...  ||.|.|.   ..|.
  Rat   193 QLVSEATFNKSTLVECSGVSHEPKQHRTAPYPPRNISV--RFVNLNKNN--WEEPSGSFPEDSFI 253

  Fly   345 KYQVSVATTR------RQSTVPRSNEPVAFFD-----FRDIAEP--GKTFNVIVKTVSGKVTSWP 396
            |.|.::...|      .....|.||....:.|     :...::|  ..:.:...:.....|:..|
  Rat   254 KPQDAIGRDRPFHFPEETPETPASNASSGWPDPNGTEYESTSQPYWWDSASAAPENEEDFVSVLP 318

  Fly   397 ATGDV------TLRP-------LPVRNLRSINDDKTNTMIITW-EADPASTQDEYRIVYHELETF 447
            |..|.      |.:|       .||:            |.::| ...|.:..|.:.|:   :|..
  Rat   319 ADYDTEATLGRTEKPTADPFSAFPVQ------------MTLSWLPPKPPTAFDGFNIL---IERE 368

  Fly   448 NGDTSTLTTDRT--RFTLESLLPGRNYSLSVQAVS-------KKMESNETSIFVVTRPSSPIIED 503
            ...|..||.|..  .|..|...||: |.|||...|       :|.:|.::..|.:: |:...||:
  Rat   369 GNFTDYLTVDEEAHEFVAELKEPGK-YRLSVTTFSSSGACETRKSQSAKSLSFYIS-PTGEWIEE 431

  Fly   504 L--KSIRMGLNI--------SWKSDVNSKQEQYEVLYSRNGT----SDLRTQKTKES-RL----- 548
            |  |...:.:::        ||    .|.||.|      |.|    ..|..||.||| ||     
  Rat   432 LTEKPQHVSVHVLSSTTALLSW----TSSQENY------NSTIVSVVSLTCQKQKESQRLEKQYC 486

  Fly   549 --------VIKNLQPGAGYELKVFAVSHDL---RSEPHAYFQAVYPNPPRNMTIETVRSNSVLVH 602
                    ||:||.|||.|::.::.....|   .|:|..:  |:.|...:::.:..:...:|::.
  Rat   487 TQVNSSKPVIENLVPGAQYQVVMYLRKGPLIGPPSDPVTF--AIVPTGIKDLMLYPLGPTAVVLS 549

  Fly   603 WSPPESGEFTEYSIRY----RTDSEQQWVRLPSVRST-----EADITDMTKGEKYTIQVNTVSFG 658
            |:.|..|.|.:|.:..    .|....:|.....:.:|     ...|.::.....|..:|..|::|
  Rat   550 WTRPYLGVFRKYVVEMFYFNPTTMTSEWTTYYEIAATVSLTSSVRIANLLPAWYYNFRVTMVTWG 614

  Fly   659 --------------VESPVPQEVNTTVPPNPVSNIIQLVDSRNITLEWPKPEGRVESYILKWWPS 709
                          :.:||..|:.:             |:..|..|           || .|...
  Rat   615 DPELSCCDSSTISFITAPVAPEITS-------------VEYFNSLL-----------YI-SWTYG 654

  Fly   710 DNPGRVQTKNVSENKSADDLSTVRVLIGELMPGVQYKFDIQTTSYGILSGITSLYPRTMPLIQSD 774
            |              :..|||..|:|                                     ..
  Rat   655 D--------------ATTDLSHSRML-------------------------------------HW 668

  Fly   775 VVVANGEKEDERDTITLSYTPTPQSSSKFDIYRFSLGDAEIRDKEKLANDTDRKV--TFTGLVPG 837
            :|||.|                                     :.|:.....|.|  ....|.||
  Rat   669 MVVAEG-------------------------------------RRKIKKSVTRNVMTAILSLPPG 696

  Fly   838 RLYNITVWTVSGGVASLPIQRQDRLYPEPITQLHATNITDTEISLRWDLPKGEYNDFDIAYLTAD 902
            .:||::|...:...::..:.|..:|.|.|...|.|.|.|.|.::|.| :.:|..:.|::      
  Rat   697 DIYNLSVTACTERGSNTSMLRLVKLEPAPPKSLFAVNKTQTSVTLLW-VEEGVADFFEV------ 754

  Fly   903 NLLAQNMTTRNE-------------ITISDLRPHRNYTFTVVVRSGTESSVLRSSSPLSASFTTN 954
              |.|.:.:.::             :|||.|.|...|..:|.           |.|..|.|..|.
  Rat   755 --LCQKLGSGHDGKLQEPVAVSSHVVTISSLLPATAYNCSVT-----------SFSHDSPSVPTF 806

  Fly   955 EAVPGRVERFHPTDVQPSEINFEWSLPSSEANGVIRQFSIAYTNINNLTDAGMQDFESEEAFGVI 1019
            .||...|     |:|.|:.:          ...|:...||....:..:|...::.          
  Rat   807 IAVSTMV-----TEVNPNVV----------VISVLAILSILLIGLLLVTLVILRK---------- 846

  Fly  1020 KNLKPGETYVFKIQAKTAIGFGP-EREYRQTMPILAPPRPATQVVPTEVYRSSSTIQIRFRKNYF 1083
            |:|:...    :..|.|.:.|.. |||.:                                    
  Rat   847 KHLQMAR----ECGAGTFVNFASLEREGK------------------------------------ 871

  Fly  1084 SDQNGQVRMYTIIVAEDDAKNASGLEMPSWLDVQSYSVWLPYQAIDPYYPFENRSVEDFTIGTEN 1148
                                                   |||.        ..|||..|.....:
  Rat   872 ---------------------------------------LPYS--------WRRSVFTFLTLLPS 889

  Fly  1149 CDNHKIGYCNGPLKSGTTYRVKVRAFTGADKFTDTAYSFPIQTDQDNTSLIVAITVPLTIILVLL 1213
            |                             .:||...:|.|.....|.                 
  Rat   890 C-----------------------------LWTDYLLAFYINPWSKNG----------------- 908

  Fly  1214 VTLLFYKRRRNNCRKTTKDSRANDNMSLPDSVIEQNRPILIKNFAEHYRLMSADSDFRFSEEFEE 1278
                ..||:..|                         |:.:.:|..:.:.|:.|||::||.:|||
  Rat   909 ----LKKRKLTN-------------------------PVQLDDFDSYIKDMAKDSDYKFSLQFEE 944

  Fly  1279 LKHVGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQPVDDDEGSDYINANYVPGHNSPREFIV 1343
            ||.:|.|.|...||||.||.|||:|||||||.||.:|..::::||:|||||||:||:|||:|:|.
  Rat   945 LKLIGLDIPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIA 1009

  Fly  1344 TQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPNDTVPVFYGDIKVQILNDSHYA 1408
            |||||..||:|||:|..:..||.|||||:|.||.|.|||.|||....|:.||||.|:::::....
  Rat  1010 TQGPLPETRNDFWKMVLQQKSRIIVMLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEMVSEEEQE 1074

  Fly  1409 DWVMTEFMLCRGSEQRILRHFHFTTWPDFGVP--NPPQTLVRFVRAFRDRIGAEQRPIVVHCSAG 1471
            ||....|.:....|.:.:.||::|.|||.|||  |..:::::||...|.:....:.|:::|||||
  Rat  1075 DWASRHFRINYADEAQDVMHFNYTAWPDHGVPPANAAESILQFVYTVRQQATKSKGPMIIHCSAG 1139

  Fly  1472 VGRSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQCL 1524
            |||:||||.|||:||.|...::|||.|:|..||..|:.|||||:|||.||||:
  Rat  1140 VGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCV 1192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470 20/82 (24%)
fn3 220..304 CDD:278470 22/107 (21%)
fn3 315..391 CDD:278470 17/91 (19%)
FN3 405..494 CDD:238020 25/105 (24%)
FN3 511..574 CDD:238020 26/91 (29%)
FN3 583..671 CDD:238020 18/110 (16%)
fn3 683..753 CDD:278470 12/69 (17%)
fn3 787..850 CDD:278470 9/64 (14%)
fn3 866..935 CDD:278470 19/81 (23%)
fn3 961..1043 CDD:278470 13/82 (16%)
PTPc 1272..1525 CDD:214550 135/255 (53%)
PTPc 1298..1525 CDD:238006 119/229 (52%)
PtproNP_059032.1 FN3 434..526 CDD:238020 28/101 (28%)
FN3 530..630 CDD:238020 15/99 (15%)
fn3 725..805 CDD:278470 23/99 (23%)
PTPc 937..1192 CDD:214550 134/254 (53%)
PTPc 965..1193 CDD:238006 119/228 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339926
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0791
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D16347at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.710

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