DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp10D and ptpn4a

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:NP_001007201.1 Gene:ptpn4a / 368448 ZFINID:ZDB-GENE-030616-449 Length:921 Species:Danio rerio


Alignment Length:1209 Identity:257/1209 - (21%)
Similarity:401/1209 - (33%) Gaps:417/1209 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   446 TFNGDTSTLTTDRTR----------------FTLESLLPGRNYSLSVQAVSKKMESNETSIFVV- 493
            ::|..|:.|..||.|                |.:.....|:   :.:.||.|.:|..|...|.: 
Zfish    12 SYNVRTTELARDRQRTEVVCNILLLDNTVQPFKVNKHDQGQ---ILLDAVFKHLELTERDYFGLH 73

  Fly   494 -----------TRPSSPIIEDLKSIRMG----LNISWK---SDVNSKQEQYEVLYSRNGTSDLRT 540
                       ..|:.||   .|.::.|    ||...|   ||.|..||:|           .|.
Zfish    74 LADEPSDSPRWLDPNKPI---RKQLKRGSPHHLNFRVKFFVSDPNKLQEEY-----------TRY 124

  Fly   541 QKTKESRLVIKNLQPGAGYELKVFAVSHDLRSE----PHAYFQAVYPNPPRNMTIETVRSNSVLV 601
            |                 |.|:   :..|:.|.    ||        |....:....|:|     
Zfish   125 Q-----------------YFLQ---IKQDILSGRLPCPH--------NTAALLASYAVQS----- 156

  Fly   602 HWSPPESGEFTEYSIRYRTDSEQQWVRLPSVRSTEADITDMTKGEKYTIQVNTVSFGVESPVPQE 666
                 |.|:::|..            .||...|....|.:..:|.:..:..:.......:|...|
Zfish   157 -----ELGDYSEAE------------NLPGYLSEFFFIPNQPQGFEKDVAKHHQQHNGLNPAQSE 204

  Fly   667 VNTTVPPNPVSNIIQLVDSRNITLEWPKPEGRVESYILKWWPSDNPGRVQTKNVSENKSADDLST 731
            .|       ..|..:.:|...:.|.:                                 |.|.|.
Zfish   205 FN-------YLNTARTLDLYGVELHY---------------------------------ARDQSN 229

  Fly   732 VRVLIGELMPGVQ-YKFDIQTTSYGILSGITSLYPRTMPLIQSDVVVANGEKEDERDTI----TL 791
            ..:.:|.|..|:. ||..::...:..|..:...:......||     ...|..|.|||:    .:
Zfish   230 TEIYVGVLSAGIGIYKNRVRINYFPWLKIVKISFKCKQFFIQ-----LRKEAHDTRDTLLGFNMV 289

  Fly   792 SY--------------------TPTPQSSSKFDIYRFSLGDAEIRDKEKLANDTDRKVTFTGLVP 836
            :|                    .|.|...:.|..| ||||     .:.:....|:.:....|...
Zfish   290 NYRACKNLWKTCVEHHTFFRLDRPVPPQKNFFAHY-FSLG-----SRFRYCGRTEAQSVQYGKEK 348

  Fly   837 G---RLYNITVWTVSGGVASLPIQRQDRLYPEPITQLHATNITDTEISLRWDLPKGEYNDFDIAY 898
            |   |::           ||.|:.|:            ...:||.|...|        |.     
Zfish   349 GIKDRVF-----------ASKPLARK------------LMGVTDWEAVSR--------NS----- 377

  Fly   899 LTADNLLAQNMTTR--------NEITISD---LRP-HRNYTFTVVVRSGTESSVL---RSSSPLS 948
            |:.:.|..:::.||        |.:.:.:   ||| ...:....|:.:.....|.   :|:|...
Zfish   378 LSEERLETRSLPTRSPPGTPNHNSLFVQEGPRLRPSSMGHLVDHVIHASPSLPVFSNHKSASSTQ 442

  Fly   949 ASFTTNEAVPGRVERFHPTDVQ-PSEINFEWSLPSSEANGVIRQFSIAYT------NINNL---- 1002
            |:..:.|:.|.      |..|: |..     :||..::...:.|..::::      :||.:    
Zfish   443 ANSISLESTPS------PEGVEGPPP-----ALPPKQSRKNLSQLILSHSQQDLDNHINEMYDVP 496

  Fly  1003 --TDAGMQDFESEEAFGVIKN-------LKPGETYVFKIQAKTAIGFGPEREYRQTMPIL----A 1054
              ||..|.:       ||:.:       :||.|...|        ||..:....|.|||:    |
Zfish   497 TATDKVMPN-------GVVPHDNLVLIKMKPDENGRF--------GFNVKGGSDQKMPIIVSRVA 546

  Fly  1055 PPRPATQVVPTEVYRSSSTIQIRFRKNYFSDQNGQVRMYTIIVAEDDAKNASGLEMPSWLDVQSY 1119
            |...|...|| .:......:.|..|: .....:.||.|:.....|..:.....|..|:.:     
Zfish   547 PGTSADLCVP-RLNEGDQVVLINGRE-IAEHSHDQVVMFIKASCESHSGELILLVRPNAI----- 604

  Fly  1120 SVWLPYQAIDPYYPFENRSVE-DFTIGTENCDNHKIGYCNGPLKSGTTYRVKVRAFTGADKFTDT 1183
                 |..::     |....| ||.            |.  |.||.|.                 
Zfish   605 -----YDVVE-----EKLETEPDFQ------------YI--PEKSPTD----------------- 628

  Fly  1184 AYSFPIQTDQDNTSLIVAITVPLTIILVLLVTLLFYKRRRNNCRKTTKDSRANDNMSLPDSVIEQ 1248
                |...|||                                  ..:||.    :.|.:.:   
Zfish   629 ----PSHLDQD----------------------------------AWRDSM----LYLKEGL--- 648

  Fly  1249 NRPILIKNFAEHYRLMSADSDFRFSEEFEELKHVGRDQPCTFADLPCNRPKNRFTNILPYDHSRF 1313
            |...::..|.:.||                 |..|....|  |.||.|..|||:.:|.|||.:|.
Zfish   649 NSGTILAQFDQLYR-----------------KRPGMTMSC--AKLPQNISKNRYRDISPYDATRV 694

  Fly  1314 KLQPVDDDEGSDYINANY----VPGHNSPREFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCF 1374
            .|:..:     |||||||    :|..:....:|..||||.:|..|||:|.||..|..:||||.  
Zfish   695 ILKGTE-----DYINANYINMEIPACSLINRYIACQGPLPNTCSDFWQMTWEQGSSMVVMLTT-- 752

  Fly  1375 EKGREKCDQYWPNDTVPVFYGDIKVQILNDSHYADWVMTEFML--CRGSEQRILRHFHFTTWPDF 1437
               :.||.|||||.:....||..::....:...:.:::.|..|  ....|.|.|....:..|||.
Zfish   753 ---QVKCHQYWPNPSGSATYGGFQISCQTEEGNSAFLVREITLTHIESGESRELTQIQYLAWPDH 814

  Fly  1438 GVPNPPQTLVRFVRAFRDRIGAEQRPIVVHCSAGVGRSGTFITLDRILQQINTSDYVDIFGIVYA 1502
            |||:.....:.||...|::...:..|:|||||||:||:|..||::..:..:..|..|....||..
Zfish   815 GVPDDSTDFLDFVALVRNKRAGKDEPVVVHCSAGIGRTGVLITMETAMCLMECSQPVFPLEIVRT 879

  Fly  1503 MRKERVWMVQTEQQYICIHQCLLAVLEGKENIVGPAREM 1541
            ||.:|..|:||..|:..:.:.:|.|.|  |.:|.|.:.:
Zfish   880 MRDQRAMMIQTPSQFKFVCEAILKVYE--EGLVKPLKSI 916

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470
fn3 220..304 CDD:278470
fn3 315..391 CDD:278470
FN3 405..494 CDD:238020 14/75 (19%)
FN3 511..574 CDD:238020 15/69 (22%)
FN3 583..671 CDD:238020 14/87 (16%)
fn3 683..753 CDD:278470 10/70 (14%)
fn3 787..850 CDD:278470 15/89 (17%)
fn3 866..935 CDD:278470 14/80 (18%)
fn3 961..1043 CDD:278470 19/101 (19%)
PTPc 1272..1525 CDD:214550 88/258 (34%)
PTPc 1298..1525 CDD:238006 81/232 (35%)
ptpn4aNP_001007201.1 B41 30..222 CDD:214604 46/265 (17%)
FERM_N 33..97 CDD:286467 12/69 (17%)
FERM_B-lobe 122..214 CDD:271216 23/148 (16%)
FERM_C_PTPN4_PTPN3_like 216..310 CDD:270010 18/131 (14%)
FA 325..364 CDD:285894 12/66 (18%)
PDZ_signaling 513..600 CDD:238492 22/96 (23%)
PTPc 653..903 CDD:214550 91/278 (33%)
PTPc 680..902 CDD:238006 81/231 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.