DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp10D and Ephb2

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:XP_038965983.1 Gene:Ephb2 / 313633 RGDID:1564232 Length:988 Species:Rattus norvegicus


Alignment Length:607 Identity:126/607 - (20%)
Similarity:197/607 - (32%) Gaps:187/607 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   873 TNITDTEISLRWDLPKGEYNDFDIAYLTADNLLAQNM----------------------TTRNEI 915
            :::.:|.:.|.|..|:......|:.|    |::.::.                      .|...|
  Rat   333 SSVNETSLMLEWTPPRDSGGREDLVY----NIICKSCGSGRGACTRCGDNVQYAPRQLGLTEPRI 393

  Fly   916 TISDLRPHRNYTFTVVVRSGTESSVLRSSSPLSASF-----TTNEAVPGRVERFHPTDVQPSEIN 975
            .||||..|..|||.:...:|     :...||.|..|     |||:|.|..|...|........|.
  Rat   394 YISDLLAHTQYTFEIQAVNG-----VTDQSPFS
PQFASVNITTNQAAPSAVSIMHQVSRTVDSIT 453

  Fly   976 FEWSLPSSEANGVIRQFSIAYTNINNLTDAGMQDFESEEAFGVIKNLKPGETYVFKIQAKTAIGF 1040
            ..||.| .:.||||..:.:.|.....|::......:|......::.||.|..|||:::|:|..|:
  Rat   454 LSWSQP-DQPNGVILDYELQYYEKQELSEYNATAIKSPTNTVTVQGLKAGAIYVFQVRARTVAGY 517

  Fly  1041 G--PEREYRQTMPILAPPRPATQVVPTEV-YRSSSTIQIRFRKNYFSDQNGQVRMYTIIVAEDDA 1102
            |  ..:.|.|||              ||. |::|  |:.:......|...|.|.:..::|.....
  Rat   518 GRYSGKMYFQTM--------------TEAEYQTS--IKEKLPLIVGSSAAGVVFVIAVVVIAIVC 566

  Fly  1103 KNASGLEMPSWLDVQSYSVWLPYQA-----------IDPY-YPFENRSVEDF------------- 1142
            ....|.|...    ..|:..|.:..           |||: |...|.:|.:|             
  Rat   567 NRRRGFERAD----SEYTDKLQHYTSGHMTPGMKIYIDPFTYEDPNEAVREFAKEIDISCVKIEQ 627

  Fly  1143 TIGT----ENCDNH-------KIGYCNGPLKSGTTYRVKVRAFTGADKFTDTAYSFPIQTDQDNT 1196
            .||.    |.|..|       :|......||||.|.:.: |.|.       :..|...|.|..|.
  Rat   628 VIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQR-RDFL-------SEASIMGQFDHPNV 684

  Fly  1197 SLIVAITVPLTIILVLLVTLLFYKRRRNNCRKTTKDSRANDNMSLPDSVIEQN------------ 1249
            ..:..:....|.::::                    :...:|.|| ||.:.||            
  Rat   685 IHLEGVVTKSTPVMII--------------------TEFMENGSL-DSFLRQNDGQFTVIQLVGM 728

  Fly  1250 ------------------RPILIKNFAEHYRLMSADSDFRFSEEFEE-------LKHVGRDQPCT 1289
                              |.:..:|...:..|:...|||..|...|:       ...:|...|..
  Rat   729 LRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIR 793

  Fly  1290 FADLPCNRPKNRFTN--------ILPYDHSRFKLQPVDDDEGSDYINA-----NYVPGHNSPREF 1341
            :. .|......:||:        |:.::...:..:|..|....|.|||     ...|..:.|   
  Rat   794 WT-APEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCP--- 854

  Fly  1342 IVTQGPLHSTRDDFWRMCWESN 1363
                ..||....|    ||:.:
  Rat   855 ----SALHQLMLD----CWQKD 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470
fn3 220..304 CDD:278470
fn3 315..391 CDD:278470
FN3 405..494 CDD:238020
FN3 511..574 CDD:238020
FN3 583..671 CDD:238020
fn3 683..753 CDD:278470
fn3 787..850 CDD:278470
fn3 866..935 CDD:278470 17/83 (20%)
fn3 961..1043 CDD:278470 23/83 (28%)
PTPc 1272..1525 CDD:214550 21/112 (19%)
PTPc 1298..1525 CDD:238006 16/79 (20%)
Ephb2XP_038965983.1 EphR_LBD_B2 19..196 CDD:198445
fn3 326..421 CDD:394996 20/96 (21%)
fn3 437..521 CDD:394996 23/84 (27%)
EphA2_TM <566..619 CDD:405290 11/56 (20%)
PTKc_EphR_B 618..886 CDD:173638 52/292 (18%)
SAM_EPH-B2 912..982 CDD:188951
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I11776
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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