DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp10D and C33H5.16

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:NP_501293.3 Gene:C33H5.16 / 183190 WormBaseID:WBGene00016382 Length:341 Species:Caenorhabditis elegans


Alignment Length:328 Identity:87/328 - (26%)
Similarity:150/328 - (45%) Gaps:51/328 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly  1220 KRRRNNCRKTTKDSR----ANDNMSLPDSVIEQNRPILIKNFAEHYRLMSADSDFRFSEEFEELK 1280
            |.:....:|.|.|.|    ....:....:.:|:. ||.::|   .:..|...:||...:.|::.:
 Worm    14 KEKAEKSQKGTNDERQKMQKKQIVQFVQTTLEKG-PIGLRN---EFNAMKRFNDFDKMQSFKKAQ 74

  Fly  1281 HVGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQ----PVDDDEGSDYINANYVPGHNSPREF 1341
                           :..|||:.::...|::|.||.    |      .|||:||:|....:.:.|
 Worm    75 ---------------DHHKNRYKDVGCLDNNRVKLAHPPWP------HDYIHANFVSTPANAKRF 118

  Fly  1342 IVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPNDTVPVFYGDIKVQILNDSH 1406
            |..|.||.:|..|||.||.:....||.||....|||.:||.:|:.....|......|.|.:...:
 Worm   119 ICAQAPLDNTCADFWYMCLQERVEAIFMLCNLMEKGAKKCSEYYATKEKPELVFHEKDQKITVKY 183

  Fly  1407 YADW-----------VMTEFMLCRGSEQRILR--HFHFTTWPDFGVPNPPQTLVRFVRAFRDRIG 1458
            .|..           |....::..|...::|:  |:|:..|||.|||....:::..:...|...|
 Worm   184 EASGTVKFVKPTKAVVKETVLIIEGPGGQVLKTTHYHWIDWPDRGVPPADLSIIELLIKARPLKG 248

  Fly  1459 AEQRPIVVHCSAGVGRSGTFITLDRILQQ-INTSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQ 1522
                ||.||||||:||:|:.:.::.:.:| :|.:...:...|:..:|::|...:||:.||:.:||
 Worm   249 ----PIAVHCSAGIGRTGSVVMIEYMCEQLLNGNQIEETDKILQKIREQRNNSIQTDHQYLFVHQ 309

  Fly  1523 CLL 1525
            .::
 Worm   310 VMM 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470
fn3 220..304 CDD:278470
fn3 315..391 CDD:278470
FN3 405..494 CDD:238020
FN3 511..574 CDD:238020
FN3 583..671 CDD:238020
fn3 683..753 CDD:278470
fn3 787..850 CDD:278470
fn3 866..935 CDD:278470
fn3 961..1043 CDD:278470
PTPc 1272..1525 CDD:214550 75/270 (28%)
PTPc 1298..1525 CDD:238006 74/244 (30%)
C33H5.16NP_501293.3 Y_phosphatase 76..313 CDD:278528 74/247 (30%)
PTPc 77..313 CDD:238006 74/246 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.