DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp10D and ptpn-22

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:NP_500128.2 Gene:ptpn-22 / 176981 WormBaseID:WBGene00021507 Length:469 Species:Caenorhabditis elegans


Alignment Length:418 Identity:112/418 - (26%)
Similarity:187/418 - (44%) Gaps:78/418 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1230 TKDSRANDNMSLPDSVIEQNRPI---LIKNFAEH-------------YRLMSADSDFRFSEEFEE 1278
            :::.||...:...:.||.:..|.   |::.|.:.             |::.......|...|:. 
 Worm    54 SEEERAATTVPNGNPVIFEKNPAMDGLLREFLKEEEAYTPQDYLRRFYQIRVEQEKLRMEAEYR- 117

  Fly  1279 LKHVGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQPVDDDEGSDYINANYVPGHNSPREFIV 1343
                   ..|..|  |.:..:||:.:|||||.:|.::|. |.:....|:||:.:.......|||.
 Worm   118 -------SECAVA--PQHYARNRYRDILPYDKNRVEIQK-DSENPEGYMNASLIQLPGGKTEFIA 172

  Fly  1344 TQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPNDT-VPVFYGDIKV-----QIL 1402
            .|.||.:|.|::|:|..|.....:|:|.:..|..:.||::|||... ....:||.::     ::.
 Worm   173 AQAPLPATLDEWWKMIDEHRVSLVVILCKLVELNKIKCERYWPEQVGESELFGDYEITLEEEKLF 237

  Fly  1403 NDSHYADWVMTEFMLCRGSEQ------RILRHFHFTTWPDFGVPNPPQTLVRFV---RAFRDRIG 1458
            :|..|       .|.|...|.      |.:...|:..|||.|.|:..:.|:..:   ....:.:.
 Worm   238 DDDEY-------LMRCLKMENQTTGECRKVHQLHYREWPDHGCPSGEKQLLNMIDLMENIHEEVS 295

  Fly  1459 -AEQRPIVVHCSAGVGRSGTFITLDRILQQI--NTSDYVDIFGIVYAMRKERVWMVQTEQQYICI 1520
             .:..||:|||||||||:||.|.::.|.:|:  .|...:||||:|..:||:|..||||:.|:..:
 Worm   296 PQDSSPILVHCSAGVGRTGTIIAINFIREQMKAETLHSIDIFGLVMTLRKQRASMVQTQDQFQFV 360

  Fly  1521 HQCLLA--------VLEGKENIVGPAREMHDNEGYEGQQVQL--------DENGDVVATIEGH-- 1567
            |:|:.:        :.|.|.::..|........|..| .|:|        ..:.|..|||..:  
 Worm   361 HRCIASYCRRHLGIIEEPKLDLAPPVATADLPVGSSG-SVRLIAPPTPTTGPSTDQTATIANYNQ 424

  Fly  1568 LSHHDLQQAEAEAIDD----ENAAILHD 1591
            |.||   |:.:..:|:    |.||.:.|
 Worm   425 LHHH---QSSSNHMDEDTSTEEAASVPD 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470
fn3 220..304 CDD:278470
fn3 315..391 CDD:278470
FN3 405..494 CDD:238020
FN3 511..574 CDD:238020
FN3 583..671 CDD:238020
fn3 683..753 CDD:278470
fn3 787..850 CDD:278470
fn3 866..935 CDD:278470
fn3 961..1043 CDD:278470
PTPc 1272..1525 CDD:214550 83/270 (31%)
PTPc 1298..1525 CDD:238006 79/244 (32%)
ptpn-22NP_500128.2 PTPc 102..365 CDD:214550 84/280 (30%)
PTPc 129..365 CDD:238006 79/243 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001181
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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