DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp10D and T13H5.1

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:NP_001122640.1 Gene:T13H5.1 / 174359 WormBaseID:WBGene00011755 Length:864 Species:Caenorhabditis elegans


Alignment Length:710 Identity:161/710 - (22%)
Similarity:266/710 - (37%) Gaps:243/710 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1299 KNRFTNILPYDHSRFKLQPVDDDEGSDYINANYVPGHNSPREFIVTQG----PLHSTRDDFWRMC 1359
            :|.:.:.||||::|..|..:|.||.|.||||:||......:.::|||.    |:::   :||||.
 Worm   234 RNPYPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNA---EFWRMV 295

  Fly  1360 WESNSRAIVMLTRCFEKGREKCDQYWPNDTVPVFYGDIKVQILNDSHYADWVMTEFMLCRGS--- 1421
            ||..|..|||||:.|:..|..|.||||  .....:.:|:|:......|:.:|:..|.|.|.:   
 Worm   296 WELGSNCIVMLTKVFDFMRVMCLQYWP--LTKFQFREIEVETTEVKTYSHFVIRTFKLTRTTPES 358

  Fly  1422 -EQRILRHFHFTTW--PDFGVPNPPQTLVRFVRAFRDRIGAEQRPIVVHCSAGVGRSGTFITLDR 1483
             |.||::|||||.|  ..|...:....|.|.||.|.::...| .|:|||||.|.||||.|:.||.
 Worm   359 IETRIVKHFHFTEWELDSFPYISAFIELRRRVRQFMEKNPVE-APMVVHCSNGAGRSGAFLALDA 422

  Fly  1484 ILQQINTSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQCLL-AVLEGKENIVGPAREMH----D 1543
            .|:.:..:..:|.|.....:...|..::.:.:||:.|::.|. ||:...:.|     |||    .
 Worm   423 NLELMKKTGQLDFFEYAKTLVNSRPHLIDSVEQYMFIYEVLSEAVMCNVQPI-----EMHLLKER 482

  Fly  1544 NEGYEGQQVQLDENGDVVATIEGHLSHHDLQQAEAEAIDDENAAILHDDQQPLTSSFTGHHTHMP 1608
            :..|:.:     :|.:::.|.|.|                ||..::                |:.
 Worm   483 SSMYKAK-----KNRELLETQETH----------------ENKLLM----------------HLT 510

  Fly  1609 PTTSMSSFGGGGGGHTNVDAPDRXHSVVNQSDNNNSVVIVLVDNKPSSMICKDSKGGNIDVLESQ 1673
            ||..:....||             |.:.|:..|.:.:|:.....:|           .:..|..:
 Worm   511 PTLRIGDCAGG-------------HRLENRGKNRDVMVVPPDHARP-----------YLQTLHGE 551

  Fly  1674 QQQQQQQQQQPNQGGHNITTISA--INGYNTLQHRRKSQLITF---SSSSCD-----IKNSLSHE 1728
            .:              :.|.|:|  ::|:.     ||::.|..   ..|:.|     |.:...|.
 Worm   552 SK--------------DYTYINAVEVDGFT-----RKAEFIVTEWPKQSTVDSFWTLIYDHACHT 597

  Fly  1729 YINGSN--------------GSAANG-----------------------------PPSSGSGSGS 1750
            .:|.||              |.|..|                             ||......|.
 Worm   598 VVNLSNQGSQRHYPSFIHNKGKANYGPFIVEIMNYHQYPAMTSHMVKVMKRPHQVPPMKVDPEGK 662

  Fly  1751 GPGSNRASRANVRLSFAEEDVMIL-PQNHSQQSNHQ--------------DDEVFTRRRSLLEV- 1799
            |..         :|:|...|:|.. .||  ||.:.:              :::|......|::| 
 Worm   663 GVS---------KLTFMISDIMATGAQN--QQIDAEVRICCVIQVRMWPIENKVPLSTTGLIDVI 716

  Fly  1800 ----------------------------EIGVEVGEDGELAPHEMEEDLEE-------------- 1822
                                        .:||.:|  ..:...:|:.|.|.              
 Worm   717 KMARSWRKRAPDRPETKPTIVMSHNGVSRVGVYIG--ANICIDQMDIDHEVDVFHAVKMMRINRP 779

  Fly  1823 ---EDEDEELYMHDE----FETHIDTKSNNANDDSGGGSYEDSHALHSSLGGSNRNSLEK 1875
               :.:||..|::|.    :.|:.|.:..:..|.      ||:.:..:|...|||:|:::
 Worm   780 QLIDMKDEYKYLYDVMLHWYMTNPDYRIYDKEDS------EDTDSQKTSRPPSNRHSIKE 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470
fn3 220..304 CDD:278470
fn3 315..391 CDD:278470
FN3 405..494 CDD:238020
FN3 511..574 CDD:238020
FN3 583..671 CDD:238020
fn3 683..753 CDD:278470
fn3 787..850 CDD:278470
fn3 866..935 CDD:278470
fn3 961..1043 CDD:278470
PTPc 1272..1525 CDD:214550 84/235 (36%)
PTPc 1298..1525 CDD:238006 84/235 (36%)
T13H5.1NP_001122640.1 PTPc 206..465 CDD:214550 85/236 (36%)
PTPc 233..465 CDD:238006 85/236 (36%)
PTPc 517..797 CDD:214550 50/335 (15%)
PTPc 528..796 CDD:304379 46/310 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.