DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp10D and ptp-5.3

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:NP_490769.2 Gene:ptp-5.3 / 171660 WormBaseID:WBGene00021207 Length:483 Species:Caenorhabditis elegans


Alignment Length:265 Identity:60/265 - (22%)
Similarity:107/265 - (40%) Gaps:52/265 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly  1296 NRPK-NRFTNILPYDHSRFKLQPVDDDEGSDYINANYVPGHNSP--REFIVTQGPLHSTRDDFWR 1357
            :.|| |:..:....|.:..||       |.||:|.:.|   :.|  |...:.|.|:.:|.:.||:
 Worm   209 SNPKFNQSEDFPALDSNLVKL-------GKDYVNISLV---DVPLGRNVHLGQAPVTNTEETFWK 263

  Fly  1358 MCWESNSRAIVMLT-----RCFEKGREKCDQY---WPNDTVPVFYGDIKVQILNDSHYADWVMTE 1414
            ..::.....|.:|.     ..|.|..|....|   |.|:.        :|:.:||..|...:.  
 Worm   264 AVFDKRITHIDLLVGDETIEFFPKKAEDYTNYGQMWINNR--------RVEYVNDDVYRFAIE-- 318

  Fly  1415 FMLCRGSEQRILRHFH-FTTWPDFGVPNPPQTLVRFVRAFRDRIG---------AEQRPIVVHCS 1469
             ::..|....|:.:.. .:.|....||      ::...|.::.:|         |::..::| ..
 Worm   319 -VVPHGCSNSIICNVTVISNWKVDTVP------LKQAIAIKEALGLNYFLLKAPADEHAMIV-SP 375

  Fly  1470 AGVGRSGTFITLDRILQQINTS-DYVDIFGIVYAMRKERVWMVQTEQQYICIHQCLLAVLEGKEN 1533
            .|.||:|.|:.|...:..|:|. ....|..||.::|.:|...|.:..||..::..||..:  |:.
 Worm   376 RGAGRAGYFLALAVAVNTIDTKLAEPCIADIVKSIRSQRPRAVDSFCQYCSLYISLLYFI--KKK 438

  Fly  1534 IVGPA 1538
            :..||
 Worm   439 VTKPA 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470
fn3 220..304 CDD:278470
fn3 315..391 CDD:278470
FN3 405..494 CDD:238020
FN3 511..574 CDD:238020
FN3 583..671 CDD:238020
fn3 683..753 CDD:278470
fn3 787..850 CDD:278470
fn3 866..935 CDD:278470
fn3 961..1043 CDD:278470
PTPc 1272..1525 CDD:214550 55/250 (22%)
PTPc 1298..1525 CDD:238006 55/248 (22%)
ptp-5.3NP_490769.2 PTPc 186..433 CDD:214550 56/251 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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