DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp10D and Epha7

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:NP_599158.1 Gene:Epha7 / 171287 RGDID:70957 Length:998 Species:Rattus norvegicus


Alignment Length:588 Identity:127/588 - (21%)
Similarity:196/588 - (33%) Gaps:160/588 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   874 NITDTEISLRWDLP--KGEYNDF---------------------DIAYLTADNLLAQNMTTRNEI 915
            ||..|.:||.|..|  .|..||.                     :|.|:.....|..|.     :
  Rat   341 NINQTTVSLEWSPPADNGGRNDVTYRILCKRCSWEQGECVPCGSNIGYMPQQTGLEDNY-----V 400

  Fly   916 TISDLRPHRNYTFTVVVRSGTESSVLRSSSPLSA-SFTTNEAVPGRVERFHPTDVQPSEINFEWS 979
            |:.||..|.||||.|...:|. |.:.||....:| |.||.:|.|.:|.......|....:...|.
  Rat   401 TVMDLLAHANYTFEVEAVNGV-SDLSRSQRLFAAVSITT
GQAAPSQVSGVMKERVLQRSVELSWQ 464

  Fly   980 LPSSEANGVIRQFSIAYTNINNLTDAGMQDFESEEAFGVIKNLKPGETYVFKIQAKTAIGFGP-- 1042
            .| ...||||.::.|.|.. .:..:......:::.....|.|||||..|||:|:|.||.|:|.  
  Rat   465 EP-EHPNGVITEYEIKYYE-KDQRERTYSTLKTKSTSASINNLKPGTVYVFQIRAFTAAGYGNYS 527

  Fly  1043 --------EREYRQTMPILAPPRPATQVVPTEVYRSSSTIQIRFRKNYF-----------SDQNG 1088
                    |....:.....|.......|:...|...:.||.:.|....|           :||.|
  Rat   528 PRLDVATLEEASGKMFEATAVSSEQNPVIIIAVVAVAGTIILVFMVFGFIIGRRHCGYSKADQEG 592

  Fly  1089 QVRMYTIIVAEDDAKNASGLEMP---SWLDVQSYSVWLPYQAIDPYYPFENRSVEDFTIGTE-NC 1149
            ...:|            ...:.|   :::|.::|.        ||     ||:|..|....: :|
  Rat   593 DEELY------------FHFKFPGTKTYIDPETYE--------DP-----NRAVHQFAKELDASC 632

  Fly  1150 DNHKIGYCNGPLKSGTTYRVKVRAFTGADKFTDTA---YSFPIQTDQDNTSLIVAITVPLTIILV 1211
                               :|:....||.:|.:..   ...|.:.|       ||:.     |..
  Rat   633 -------------------IKIERVIGAGEFGEVCSGRLKLPGKRD-------VAVA-----IKT 666

  Fly  1212 LLVTLLFYKRRRNNCRKTTKDSRANDNMSLPDSVIEQNRPILI-----KNFAEHYRLMSADSDFR 1271
            |.|.....:||...|..:......:.|:...:.|:.:.:|::|     :|.|....|...|..|.
  Rat   667 LKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFT 731

  Fly  1272 FSEEFEELKHVG------RDQPCTFADLPCNRPKNRFTNILPYDH-----SRFKLQPV--DDDEG 1323
            ..:....|:.:.      .|......||...       |||...:     |.|.|..|  ||.|.
  Rat   732 VIQLVGMLRGIAAGMRYLADMGYVHRDLAAR-------NILVNSNLVCKVSDFGLSRVIEDDPEA 789

  Fly  1324 SDYINANYVPGHNSPREFIVTQGPLHSTRDDFW--------------RMCWESNSRAIVMLTRCF 1374
            ........:|...:..|.|  |....::..|.|              |..|:.:::.::   :..
  Rat   790 VYTTTGGKIPVRWTAPEAI--QYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVI---KAI 849

  Fly  1375 EKG 1377
            |:|
  Rat   850 EEG 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470
fn3 220..304 CDD:278470
fn3 315..391 CDD:278470
FN3 405..494 CDD:238020
FN3 511..574 CDD:238020
FN3 583..671 CDD:238020
fn3 683..753 CDD:278470
fn3 787..850 CDD:278470
fn3 866..935 CDD:278470 23/83 (28%)
fn3 961..1043 CDD:278470 25/91 (27%)
PTPc 1272..1525 CDD:214550 24/133 (18%)
PTPc 1298..1525 CDD:238006 20/101 (20%)
Epha7NP_599158.1 EphR_LBD_A7 30..206 CDD:198453
FN3 332..438 CDD:238020 29/102 (28%)
FN3 443..534 CDD:238020 26/92 (28%)
EphA2_TM 565..630 CDD:405290 17/89 (19%)
PTKc_EphR_A 628..894 CDD:270651 48/268 (18%)
SAM_EPH-A7 919..988 CDD:188947
PDZ-binding. /evidence=ECO:0000255 996..998
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I11776
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.