DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp10D and Ptprh

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:NP_001178874.1 Gene:Ptprh / 171125 RGDID:620553 Length:971 Species:Rattus norvegicus


Alignment Length:1164 Identity:313/1164 - (26%)
Similarity:486/1164 - (41%) Gaps:265/1164 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   452 STLTTDRTRFTLESLLPGRNYSLSVQAVSKKMESNETSIFVVTRPSSPIIEDLKSIRM------G 510
            |.:.|..||.|::.|.|..:|..||.|....:..:..::...|.| :|:    :::|:      .
  Rat    23 SVVRTAGTRVTVDRLAPASSYEFSVWAEKDGVSGSPQTLIATTAP-NPV----RNLRVEGQNTTS 82

  Fly   511 LNISWKSDVNSKQEQYEVLY-----SRNGTSDLRTQKTKESRLVIKNLQPGAGYELKVFAVSHDL 570
            :::||....||..:  ::.|     ..:|.::  |:.||::|:.:..|.||..||..|......:
  Rat    83 ISLSWDPPENSSSQ--DLTYWAQCIRYDGQNE--TRHTKDTRVTVDGLDPGTSYECSVRVEKDGV 143

  Fly   571 RSEPHAYFQAVYPNPPRNMTIETVRSNSVLVHWSPPE---SGEFTEYS--IRYRTDSEQQWVRLP 630
            .|..........|||.||:.:|...:.|:.:.|.|||   |.:.|.::  |||...:|.:     
  Rat   144 YSTWETKNTTTAPNPVRNLRVEGQNTTSISLSWDPPENSSSQDLTYWAQCIRYDGQNETR----- 203

  Fly   631 SVRSTEADITDMTKGEKYTIQVNTVSFGVESPVPQEVNTTVPPNPVSNIIQLVDSRN---ITLEW 692
            ..:.|...:..:..|..|...|.....||.| ..:..|||..||||.|:  .|:.:|   |:|.|
  Rat   204 HTKDTRVSVDGLDPGTSYECSVRVEKDGVYS-TWETKNTTTAPNPVRNL--RVEGQNTTAISLSW 265

  Fly   693 PKPEGRVESYILKWWPS--DNPGRVQTKNVSENKSADDLSTVRVLIGELMPGVQYKFDIQTTSYG 755
            ..||.. .|..|.:|..  ...|:.:|::..:         .||.:..|.||..|:..::....|
  Rat   266 DPPENS-SSQDLTYWAQCIGYDGKNETRHTKD---------TRVTVDGLDPGTSYECSVRVEKDG 320

  Fly   756 ILSGITSLYPRTMPLIQSDVVVANGEKEDERDT-ITLSYTPTPQSSSKFDIYRFS--LGDAEIRD 817
            :.|...:....|.|     ..|.|...|.:..| |:||:.| |::||..|:..::  :|   ...
  Rat   321 VYSTWETKNTTTAP-----NPVRNLRVEGQNTTAISLSWDP-PENSSSQDLTYWAQCIG---YDG 376

  Fly   818 KEKLANDTDRKVTFTGLVPGRLYNITVWTVSGGVAS---------LPIQRQDRLYPEPITQLHAT 873
            |.:..:..|.:||..||.||..|..:|.....||.|         :||..     |.|:..|...
  Rat   377 KNETRHTKDTRVTVDGLDPGTSYECSVRVEKDGVYSTWETKNTTTVPISA-----PNPVRNLRVE 436

  Fly   874 NITDTEISLRWDLPKGEYNDFDIAY----LTADNLLAQNMTTRNEITISDLRPHRNYTFTVVVRS 934
            ....|.|||.||.|:...:. |:.|    :..|.......|....:::..|.|..:|        
  Rat   437 GQNTTSISLSWDPPENSSSQ-DLTYWAQCIRYDGQNETRHTKDTRVSVDGLDPGTSY-------- 492

  Fly   935 GTESSVLRSSSPLSASFTTNEAVPGRVERFHPTDVQPSEINFEWSLPSSEANGVIRQFSIAYTNI 999
              |.||......:.:::.|..           |...|:.:|....:.:|...|:|..:|.     
  Rat   493 --ECSVRVEKDGVYSTWETKN-----------TTTVPAAVNITSCISTSGGYGIILTWSC----- 539

  Fly  1000 NNLTDAGMQDFESEEAFGVIKNLKPGETY-VFKIQAKTAIGFGPEREYRQTMPILAPPRPATQVV 1063
                                    |..:| .|:::    :|                        
  Rat   540 ------------------------PSGSYETFEVE----VG------------------------ 552

  Fly  1064 PTEVYRSSSTIQIRFRKNYFSDQNGQV--RMYTIIVAEDDAKNASGLEMPSWLDVQSYSVWLPYQ 1126
                           ||  :|.|||.:  :..|::..|               ..|||:.     
  Rat   553 ---------------RK--WSSQNGSLCGKGMTVLDLE---------------PAQSYTA----- 580

  Fly  1127 AIDPYYPFENRSVEDFTIGTENCDNHKIGYCNGPLKSGTTYRVKVRAFTGADKFTDTAYSFPIQT 1191
                            |:.|                  .:..:||:             |.|...
  Rat   581 ----------------TVTT------------------VSNSLKVQ-------------SAPATC 598

  Fly  1192 DQDNTSLIVAITVPLTIILVLL-VTLLFYKRRRNNCRKTTKDSRANDNMSLP-DSVIEQNRPILI 1254
            ..::|::|....|.:.::.:|: :.::|.||||.  ::..|:        :| |.|......||.
  Rat   599 RTESTAVIAGAIVGILLLFILVGLLIVFLKRRRK--KQQPKE--------VPKDLVFRFPGDILA 653

  Fly  1255 KNFAEHYRLMSADSDFRFSEEFEELKHVGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQPVD 1319
            |:||:|.|....||:..|:||:::|...|:.|....|....|..|||:.|:||||.||..|||:.
  Rat   654 KDFADHVRENEKDSNCGFAEEYQQLALEGQGQSQMTALALENVSKNRYRNVLPYDWSRVPLQPLH 718

  Fly  1320 DDEGSDYINANYVPGHNSPREFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQY 1384
            ::.|||||||:::||..||:|||.|||||..|..|||||.||..|..:|||..|.|.|:.||:.|
  Rat   719 EEPGSDYINASFMPGLWSPKEFIATQGPLPHTVSDFWRMVWEQQSHTLVMLANCMESGQVKCEHY 783

  Fly  1385 WPNDTVPVFYGDIKVQILNDSHYADWVMTEFMLCRGSEQRIL--RHFHFTTWPDFGVPNPPQTLV 1447
            ||.|..|..:|.::|.::::....:|.:....|....||:.|  |.||:..|||.|||..|..|:
  Rat   784 WPLDAQPCTHGQLQVTLVSEEVTENWTVRHLQLFHMKEQQTLSVRQFHYVAWPDHGVPYSPDPLL 848

  Fly  1448 RFVRAFRDRIG--AEQRPIVVHCSAGVGRSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWM 1510
            .|.:..|..:.  .:..|.:|||||||||:||.|.||.:|:|:.....||.|..|..||:.|..|
  Rat   849 AFQKLLRQWLDQTMDGGPPIVHCSAGVGRTGTLIALDVLLRQLECEGLVDPFSFVKKMRESRPLM 913

  Fly  1511 VQTEQQYICIHQCLLAVLEGKENIVGPAREMHDNEGYEGQQVQLDENGDVVATIEGHLS 1569
            ||||.||:.:|||:|..|: |.:...||:|    ..||.....:.||...:...|..:|
  Rat   914 VQTEAQYVFLHQCILRSLQ-KPDPALPAKE----ATYENVASLVYENASAIRAHESEVS 967

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470
fn3 220..304 CDD:278470
fn3 315..391 CDD:278470
FN3 405..494 CDD:238020 11/41 (27%)
FN3 511..574 CDD:238020 17/67 (25%)
FN3 583..671 CDD:238020 26/92 (28%)
fn3 683..753 CDD:278470 18/74 (24%)
fn3 787..850 CDD:278470 20/65 (31%)
fn3 866..935 CDD:278470 16/72 (22%)
fn3 961..1043 CDD:278470 11/82 (13%)
PTPc 1272..1525 CDD:214550 116/256 (45%)
PTPc 1298..1525 CDD:238006 108/230 (47%)
PtprhNP_001178874.1 FN3 67..154 CDD:238020 20/95 (21%)
FN3 156..243 CDD:238020 26/92 (28%)
FN3 245..332 CDD:238020 25/98 (26%)
FN3 334..421 CDD:238020 27/95 (28%)
FN3 427..514 CDD:238020 22/108 (20%)
PTPc 670..929 CDD:214550 116/258 (45%)
PTPc 698..928 CDD:238006 108/229 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D16347at33208
OrthoFinder 1 1.000 - - FOG0001181
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR19134
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

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