DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp10D and ush2a

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:XP_031757900.1 Gene:ush2a / 105947335 -ID:- Length:5221 Species:Xenopus tropicalis


Alignment Length:1426 Identity:295/1426 - (20%)
Similarity:495/1426 - (34%) Gaps:356/1426 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 LAAFTLKDVR---CADLAISIPNNPGLDDGASYRLDYSPPFGY---------PE----------- 73
            |.|:|..|||   |..      .|.|:....|.|.|.:||.|.         ||           
 Frog  3830 LNAYTEYDVRVQACQH------GNCGVGPRVSTRTDEAPPEGLDCPHMVAVGPETIKIDWRPPVK 3888

  Fly    74 PNTTIAS-------REIGDEIQFSRA--------------LPGTKYNFWLYYTNFTHHDWLTWTV 117
            ||..|.|       .:..:|:...|.              ||.|.|.:.:...|........|::
 Frog  3889 PNGIITSYFIYRRPADSDEELLVHRCLDGILEYTDSTNGLLPHTAYEYCVRAENPRGSVQSVWSL 3953

  Fly   118 --TITTAP---DPPSNLSVQVRSGKNAIILWSPPTQGS-----YTAFKIKVLGLSEASSSYNRTF 172
              |:..||   :||   ||.|....:..:.|:||...:     |.....:..|....|||..||.
 Frog  3954 IYTLEAAPEELEPP---SVIVTGAYSVFLTWNPPAYPNGIINYYHVIYEEFPGEQGFSSSAERTL 4015

  Fly   173 QVNDNTFQHSVKELTPGATY--QVQA----------YTIYDGKESVAYTSRNFTTKPNTPGKFIV 225
            .....|:|..|..|.|..||  .::|          .|:....|:......|||.:.|..||   
 Frog  4016 TFQGTTYQTMVFGLLPATTYGFHIEASNTASKASSTSTLAQTMEASPSGLSNFTVEKNENGK--- 4077

  Fly   226 WFRNETTLLVLWQPP-------------------YPAGI-----------YTHYKVSIEPPDAND 260
                  .||:.||.|                   | :|:           ||:|.:.:|...|..
 Frog  4078 ------ALLLKWQAPERTNGKIQMYNVFCDGNIEY-SGLSHQFFFQRLQSYTNYTLVLEACTAAG 4135

  Fly   261 SVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTMSEDEISLPTTAQYRTVPLRPLNVTFDRDFI 325
            .....        |..|..:...|......|:..::...:.|     |.:.|:.|..        
 Frog  4136 CTRAF--------PQLAQTEEAFPASQLPPSIHFVNSSHVEL-----YWSPPMYPNG-------- 4179

  Fly   326 TSNSFRVL--WEAPKGISE-FDKYQVSVATTRRQSTVPRSNEPVAFFD-----FRDIAEPGKTFN 382
            ....:.|:  | :|:|.|| .|.....:..|.|.:    |:|...:.|     :.:.....:.:|
 Frog  4180 QLKQYNVIKRW-SPEGPSENKDNMNEKIVHTERNT----SSEIYTYVDGGLHPWTEYEYKIRVWN 4239

  Fly   383 VIVKTVSGKVTSWP--ATGDVTLRPLPVRNLRSINDDKTNTMIITWEADPASTQDE------YRI 439
            .:..|.|    ||.  .|.....|.||...|..: ::..:.::|.|    :..::|      ||:
 Frog  4240 SVAYTDS----SWSLVRTSQAAPRRLPPPKLFHV-ENNPHQLVIQW----SQPEEENGIILSYRL 4295

  Fly   440 VYHELE---TFNGDTSTLTTDRTRFTLESLLPGRNYSLSVQAVSKKMESNETSIFVVTRPSSPII 501
            ..:.:.   ||:.:|.|       :..|.||....||.|:.|.:....:...:..:.|..::|.:
 Frog  4296 QRNNISFHFTFDSETFT-------YIDEGLLAHTKYSYSITACTLGGCTTSDAAHIQTLEAAPAL 4353

  Fly   502 ---EDLKSI-RMGLNISWKSDV--NSKQEQYEVLYSRNGTSDLRTQKTKESRLVIKNLQPGAGYE 560
               .::||: ...:|::|.|.:  |.:..:|.:...::     :....|:...::.||||...|.
 Frog  4354 VYPPEVKSVSSTEINVTWSSPLLTNGEISKYIIQMDKD-----KYFVGKKLSTLVSNLQPFTQYN 4413

  Fly   561 LKVFAVSH-DLRSEPHAYFQAVYPNPPRNM---TIETVRSNSVLVHWSPPE--SGEFTEYSIRYR 619
            :.:.|.:: ...|.....|:.: ..||..|   |......:|:.:.|..|:  :|:..:|.:| |
 Frog  4414 ISLLACTNGGCTSSLTTSFRTM-EAPPLEMKAPTYNVTGPSSINLTWESPDKPNGQIRKYELR-R 4476

  Fly   620 TDSEQQWVRLPSVRSTEADITDMTKGEKYT--IQVNTVSFGVESPV------PQEVNTTVPPNPV 676
            .|     :.:...:.|:.....:|.|.:|:  :|.:.....:.||.      |...:...||.  
 Frog  4477 DD-----LVIYVGQDTKYHDFGLTPGMEYSYAVQADNNEGNITSPSVKIKTHPSSPSDLEPPE-- 4534

  Fly   677 SNIIQLVDSRNITLEWP---KPEGRVESYILKWWPSDNPGRVQTKNVSENKSADDLSTVRVLIGE 738
               ||.:.:..|.:.|.   ||.|.:.:|.|.   ...|..:.||....:.|....|....::.|
 Frog  4535 ---IQALSAHEILVSWRPPLKPNGDIINYTLS---IRCPLEMATKKYHLDNSLTSQSRQSFIVRE 4593

  Fly   739 LMPGVQYKFDIQ-------TTSYGILSGITSLYP---RTMPLIQSDVVVANGEKEDERDTITLSY 793
            |.|..||:..|:       |||.. .||.|...|   :..|||..        :.:::..:.|..
 Frog  4594 LQPYHQYEAKIEACTFLGCTTSEW-ASGYTMEAPPESQPSPLIDL--------QTNQQQPLLLWN 4649

  Fly   794 TPT-PQSSSKF-DIYRFSLGDAEIRDKEKLA-NDTDRKVTFTGLVPGRLYNITVWTV--SGGVAS 853
            :|: |.....| ::||..:...:....|:|. |.:........|:|...|...:|.|  :|...|
 Frog  4650 SPSNPNGRILFYELYRRRISSLKDNAPEELVYNGSSTSFKDMKLLPYTEYEYQLWAVNSAGRTPS 4714

  Fly   854 LPIQ-RQDRLYPEPITQLHATNITDTEISLRWDLPKGE------YNDFDIAYLTADNLLAQNMTT 911
            |.|. |.....||.|.......:|.|:...:...|...      |..|.......|.:|::.  |
 Frog  4715 LWIYCRTGPAPPEGILAPTFDTVTSTQAVAKIPPPSTPNGIVTLYRFFSGNNTGPDAILSEG--T 4777

  Fly   912 RNEITISDLRPHRNYTFTVVVRSGTE-SSVLR--SSSPLSASFTTNEAVPGRVERFHPTDVQPSE 973
            .|...:..|||..||:.      |.| .:.|:  |..|: ....|..|.|........|......
 Frog  4778 SNVQVLYGLRPFTNYSV------GAEVCTCLKCCSRGPM-VQLATQPAPPSHQLPPRVTHATSRS 4835

  Fly   974 INFEWSLPSSEANGVIRQFSIAYTN-----------INNLTDAGMQDFESEEAFGVIKNLKPGET 1027
            .:|||..|.| .||:|..:.:....           |....:...:..|.|   ..:.:|:|...
 Frog  4836 ASFEWKEPES-PNGIIEGYEVHMQTPCPQPAQVVPCIRGAPEIKCRGIEKE---CNVTDLQPYTH 4896

  Fly  1028 YVFKIQAKTAIGFGPEREYRQTMPILAPPRPATQVVPT---EVYRSSSTIQIRFRKNYFSDQNGQ 1089
            |..::.:..|:| ....|:...:        ..:..||   .|:.||:...|....:.....||.
 Frog  4897 YSVQVISHNAVG-SAASEWISCV--------TNKENPTYNRNVHVSSNITTIFLDWSLSFQLNGD 4952

  Fly  1090 VRMYTIIVAEDDAKNASGLEMPSWLDVQSYSVWLPYQAIDPYYPFENRSVEDFTIGTENCDNHKI 1154
            ::.:  ::.|...:..||.:...:|.          :.:|....||.....|            :
 Frog  4953 LKEF--VLTERGQRLYSGFDSSIYLQ----------RTMDKTLFFEVTCTTD------------V 4993

  Fly  1155 GYCNGPL--KSGTTYRVKVRAFTGADKFTD----TAYSFPIQTDQDNTSLIVAITVPLTIILVLL 1213
            |..:.|:  .:..|.....:.|..|...||    |.|          |.|...|.:.||.:|:|.
 Frog  4994 GKVSSPIIKYNSATGLAPAQPFPSAKNGTDSRGNTFY----------TELWFIILMALTGLLLLA 5048

  Fly  1214 VTLLFYKRRRNNCRK---------------------TTKDSRANDNMS------LPDSVIE 1247
            :.|....|::.|.:.                     |..::.|..::|      ||||:::
 Frog  5049 IFLSLVLRKKINKQAYPRERPPLVPVQPRMSPASAYTQHETYAKHSLSDSQHVLLPDSILK 5109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470 24/97 (25%)
fn3 220..304 CDD:278470 19/113 (17%)
fn3 315..391 CDD:278470 16/83 (19%)
FN3 405..494 CDD:238020 19/97 (20%)
FN3 511..574 CDD:238020 13/65 (20%)
FN3 583..671 CDD:238020 20/100 (20%)
fn3 683..753 CDD:278470 19/79 (24%)
fn3 787..850 CDD:278470 14/67 (21%)
fn3 866..935 CDD:278470 15/74 (20%)
fn3 961..1043 CDD:278470 17/92 (18%)
PTPc 1272..1525 CDD:214550
PTPc 1298..1525 CDD:238006
ush2aXP_031757900.1 LamG 144..280 CDD:419873
Laminin_N 313..515 CDD:413488
EGF_Lam 516..572 CDD:238012
Laminin_EGF 574..631 CDD:395007
Laminin_EGF 640..690 CDD:395007
EGF_Lam 692..>732 CDD:238012
EGF_Lam 746..791 CDD:214543
EGF_Lam 794..833 CDD:214543
Laminin_EGF 844..894 CDD:395007
EGF_Lam 897..945 CDD:214543
EGF_Lam 947..997 CDD:238012
Laminin_EGF 999..1047 CDD:395007
FN3 1062..1140 CDD:238020
FN3 1153..1233 CDD:238020
FN3 1234..1353 CDD:238020
fn3 1362..1444 CDD:394996
LamG 1513..1675 CDD:238058
LamG 1713..1867 CDD:238058
FN3 1958..2045 CDD:238020
FN3 2064..2132 CDD:238020
FN3 2137..2219 CDD:238020
FN3 2235..2318 CDD:238020
FN3 2321..2415 CDD:419708
FN3 2430..2523 CDD:238020
FN3 2528..2614 CDD:238020
FN3 2616..2714 CDD:238020
fn3 2723..2793 CDD:394996
FN3 2811..2913 CDD:238020
fn3 2922..2996 CDD:394996
FN3 3013..>3080 CDD:238020
FN3 3584..3672 CDD:238020
fn3 3772..3849 CDD:394996 8/24 (33%)
FN3 3862..3956 CDD:238020 17/93 (18%)
fn3 3960..4047 CDD:394996 25/89 (28%)
FN3 4157..4249 CDD:238020 21/113 (19%)
fn3 4262..4335 CDD:394996 18/84 (21%)
FN3 4357..4434 CDD:238020 16/81 (20%)
FN3 4445..4522 CDD:238020 16/82 (20%)
FN3 4524..4619 CDD:238020 26/103 (25%)
FN3 4631..4721 CDD:238020 21/97 (22%)
FN3 4817..4919 CDD:238020 20/114 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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