DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp10D and col12a1

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:XP_002936246.3 Gene:col12a1 / 100495209 XenbaseID:XB-GENE-1012295 Length:3121 Species:Xenopus tropicalis


Alignment Length:2483 Identity:449/2483 - (18%)
Similarity:755/2483 - (30%) Gaps:933/2483 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 GYPEPNTTIASREI----------------GDEIQFSRALPGTKYNFWLYYTNFTH--------- 109
            |..:....|.:||:                ..|::...:||..|:.|  ...||..         
 Frog   251 GKSQDEVEIPARELRSLGVEVFSLGIKAADAKELKQIASLPSLKHVF--NVANFDSIVEVQDEII 313

  Fly   110 -------HDWLTWTVTITTAPDPPSNLSVQVRSGKNAIILWSP-PTQGSYTAFKIKVLGLSEASS 166
                   .:.|:..|:...|.:|||:::|...|.|:..|.|.| |:|  .|.::|::|.:...|.
 Frog   314 TQVCSGVEEQLSELVSGEEAVEPPSDMTVTEISSKSMKITWRPSPSQ--ITGYRIQLLPMLAGSK 376

  Fly   167 SYNRTFQVNDNTFQHSVKELTPGATYQVQAYT--------------------------------- 198
            .:  :..:...|...:||:|:|...||:..|.                                 
 Frog   377 QH--SLNLGPQTTSINVKDLSPDTEYQINLYAMKGLTASEPISTLEKTQAVKIKVECSGGVDIKA 439

  Fly   199 ----IYDGKES-------------------------------VAYTSRNFT-------------- 214
                :.||..|                               |.|:...||              
 Frog   440 DVVLLVDGSYSIGVANFAKVRAFLEVLVKSFDISPSKVQISLVQYSRDPFTEFTLNRYDSIEDIL 504

  Fly   215 --------------------------------TKPNTPGKFI---------------VWFRN--- 229
                                            .:||.|...|               :..||   
 Frog   505 KAVNTFPYRGGSTNTGKAMTYVREKVFVEIKGARPNVPRVMILITDGKSSDAFKDPAIKLRNSDV 569

  Fly   230 -----------ETTLLVLWQPPYPAGIYT------HYKVSIE----------------------- 254
                       .:.|..:..||....:||      ..::|.|                       
 Frog   570 EIFAVGVKDAVRSELEAIASPPSDTHVYTVEDFDAFQRISFELTQSICLRIEQELQTIKRKSLTP 634

  Fly   255 ------------------PPDANDSVLYVEK------EGEP-----PGP-AQAAFKGLVPGRAYN 289
                              .|.|.|.:.|:.|      |||.     |.| .......|:|...|.
 Frog   635 ARDLAFSEVTSNSFRVNWSPAAEDVLSYLVKYKVAVGEGEEFIVSVPAPKTTTVLSNLLPETTYA 699

  Fly   290 ISVQTMSEDEISLPTTAQYRTV----PLRPLNVTFDRDFITSNSFRVLWE-APKGISEFD-KYQV 348
            ::|....|:..|.|...:..|:    |.|.|.|:.:    |::||:|.|. ||..:..:. .|:.
 Frog   700 VAVLAEYEEGESPPLNGEETTLEVTGPPRNLRVSDE----TTDSFKVGWSPAPGNVLRYRIAYRP 760

  Fly   349 SVATTRRQSTVP--------RSNEPVAFFDFRDIAE----PGKTFNVIVKTVSGKVTSWPATGDV 401
            .....||:.|||        ::..|...:....|.|    |||           .:|...||.:|
 Frog   761 VAGGARREVTVPGRETVTTLQNLTPDTKYQVSVIPEYHSGPGK-----------PLTGNGATEEV 814

  Fly   402 TLRPLPVRNLRSINDDKTNTMIITWEADPASTQDEYRIVYHELETFNGDTSTLTT--DRTRFTLE 464
            ...|   |||| ::|..|:::.::|::.|.... :|.:.|:  .:..|:|..:|.  :.|...|:
 Frog   815 LGEP---RNLR-VSDATTSSLKLSWDSAPGKVL-QYLVTYN--PSAEGETKEVTVRGNTTSTVLK 872

  Fly   465 SLLPGRNYSLSVQAVSKK-----MESNETSIFVVTRPSSPIIEDLKSIRMGLN------------ 512
            .|.|...|||||.|:.:.     :....|::.....|.:.:.:|:....:|.:            
 Frog   873 GLDPSTTYSLSVAALYRSGAGSLLTGEGTTLDERGSPRNLVTKDITDTTIGASWTAAPGMVRGYR 937

  Fly   513 ISWKS--DVNSKQEQY--------------EVLYS-------RNGTSD-LRTQKTKE-------- 545
            |:|||  |.:|.::..              |..|.       |:|..| |..:.|.|        
 Frog   938 IAWKSLFDDDSGEKNVPGGITNTVLENLRPETKYKISVFANYRSGEGDPLEGEATTEASPSAKLL 1002

  Fly   546 ---------------------------------------------SRLVIKNLQPGAGYELKVFA 565
                                                         |..|:|.|||...|::.|..
 Frog  1003 KVSDETETTMKVTWQPAPGNVANYRVIYRPKLGGRQVVAKVPATVSSTVLKRLQPQTTYDITVVP 1067

  Fly   566 VSHDLRSEPH-------AYFQAVYPNPPRNM-----TIETVRSNSVLVHWSPPESGEFTEYSIRY 618
            |......:|.       :.|:     ||||:     ||.|.|     |.|. |..||...|.|.|
 Frog  1068 VYKAGDGKPRQGEGTTASPFK-----PPRNLKTSDPTISTFR-----VTWE-PAPGEVRGYKITY 1121

  Fly   619 RTDSEQQWVRLPSVRSTEADIT--DMTKGEKYTIQVNTVSFGV----ES-PVPQEVNTTVPPNP- 675
            ....|:|::....|...:..:.  ::..|..|.:.|    |||    || |:..:..||:...| 
 Frog  1122 FPFGEEQYLGELVVGPYDNTVVLEELRAGTSYKVNV----FGVFEKGESVPLIGQEMTTLSDAPE 1182

  Fly   676 --------------VSNIIQLVDSRNITLEWP--KPEGR-VESYI-----------------LKW 706
                          .::|:.|||.     .|.  :|..| |.|:|                 |..
 Frog  1183 VRIDSSGLECKTKAAADIVLLVDG-----SWSIGRPNFRTVRSFIARLVEVFDIGSDRVQIALAQ 1242

  Fly   707 WPSDNPGRVQTKNVSENKS-ADDLSTVRVLIGELMPGVQYKFDIQ------------TTSYGIL- 757
            :..|.....|....|..|| .|.::.:....|..:.|:...|.:|            :...|:| 
 Frog  1243 YSGDPRSEWQLNAHSTKKSLMDAVANLPYKGGNTLTGMALNFILQNNFKAEAGMRAKSKKIGVLI 1307

  Fly   758 -------------------------SGITSLYPRTMPLIQSD----------------------- 774
                                     .||.:.....:..|.||                       
 Frog  1308 TDGKSQDDIVAPSKKLRDQGIDLFAIGIKNADENELRQIGSDPDETYVFNVADFSLLVNIVDDLT 1372

  Fly   775 ------VVVANGEKEDERDTITLSYTP-------TPQSSS----KFDIYRFSLGDAEIRDKEKLA 822
                  |..:..|.|...|.:|...||       .|.|.|    :.:.|..|.|    |..|...
 Frog  1373 TNLCNSVKGSGNELEPPSDLVTSEPTPRSFRVTWNPPSHSVDRFRVEYYPVSGG----RPLEVFV 1433

  Fly   823 NDTDRKVTFTGLVPGRLYNITVWTVSGGVASLPIQRQDRLYPEP-ITQLHATNITDTEISLRWDL 886
            ..:||....|.|.|...|.:.|::|..|.:|.|::..:...|.| :..|:..:|....:.:||:.
 Frog  1434 GRSDRTTVLTNLKPETEYVVKVYSVLEGESSEPLEGTETTLPIPSVRNLNIYDIGTRTMRVRWEA 1498

  Fly   887 PKG------EYNDFDIAYLTADNLLAQNMTTRNEITISDLRPHRNYTFTVVVRSGTESSVLRSSS 945
            ..|      :|...:....:.:..|....:. .::.:.||.|:..||.||......     ..|.
 Frog  1499 ALGATGYLLQYEPVNATVPSTEKELRVGASV-TDVLLEDLFPNTEYTLTVYALFDE-----LISD 1557

  Fly   946 PLSASFTTNEAVPGR-VERFHPTDVQPSEINFEWSLPSSEANGVIRQFSIAYTNINNLTDAGMQD 1009
            ||::...|   :|.: |......|:..|.:|..|    |.|.|.:.::.:.|.....      ::
 Frog  1558 PLTSQEVT---LPIQGVGNIRVRDITHSSMNVLW----SAAPGNVLKYIVRYKTEEE------EE 1609

  Fly  1010 FESEEAFGVIKNLKPGETY---VFKIQAKTAIGFGPEREYRQTMPILAP-PRPATQVVPTEVYRS 1070
            |:..|..|...:.:..:.:   :::| :.||:......:.|.|....|| |.||.       .|.
 Frog  1610 FKEVEVDGSRTSTRLTDLFSQTLYEI-SLTAVYDEGVSQPRTTQGTTAPVPAPAN-------LRF 1666

  Fly  1071 SSTIQIRFRKNYFSDQNG--QVRMYTIIVAEDDAKNASGLEMPSWLDVQSYSVWLPYQAIDPYYP 1133
            |......||..:   ::|  .|.:|.|                         .|.|..||:.   
 Frog  1667 SEIAVTSFRGTW---EHGAPDVALYRI-------------------------TWAPVGAIEK--- 1700

  Fly  1134 FENRSVEDFTIGTENCDNHKIGYCNGPLKSGTTYRVKVRAFTGADKFTDTAYSFPIQTDQDNTSL 1198
             :..::.|..|.|...|.         |:..|.|.|.|.|.            :|.:::.::   
 Frog  1701 -KKETIVDGDINTLVFDE---------LEPDTEYEVSVTAI------------YPDESESED--- 1740

  Fly  1199 IVAITVPLTIILVLLVT---------LLFYKRRRNNCRKTTKDSRANDNMSLPDSVIEQNRPILI 1254
              .|.|..|:..::..|         |..:...:|:.  |.:..||..:               :
 Frog  1741 --LIGVERTLPEIISTTPALRTGPRNLQVFNATQNSL--TVRWDRAMGD---------------V 1786

  Fly  1255 KNFAEHYRLMSADSDFRFSEEFEELKHVG---------RDQPCTFADLPCN-------------- 1296
            :.:..:|:.:||..       .|::..||         |.||    |.|.|              
 Frog  1787 QKYNIYYKPVSAAG-------AEQMTSVGGKQNSVVLQRLQP----DTPYNIVVSSRYIGDEEGG 1840

  Fly  1297 --------RPKNRFTNILPYDHS----------------RFKLQPVDDDEGSDYINANYVPGH-- 1335
                    :|.|...|:..||.:                |:|:..|....|.:  ....|||:  
 Frog  1841 NISGRGKTKPLNTVKNLRVYDPTTSTLNVRWEAAEGNVRRYKIYYVPTAGGPE--ETVTVPGNTI 1903

  Fly  1336 -------NSPREFIVTQGPLHSTRDDFWRMCWESNS--RAIVMLTRCFEKGREKCDQYW------ 1385
                   .|...:.||..|::| ..:..||.....:  |..|...:.:.......:..|      
 Frog  1904 YSVLRNLQSDTSYTVTVVPVYS-EGEGGRMSETGKTLVRGTVRNIQVYNPTTNTLNVRWEPAPGQ 1967

  Fly  1386 ---------------PNDTVPV---FYGDIKVQILNDSHYADWVMTEFMLCRGSEQRILRHFHFT 1432
                           |.::|.|   .:..:..|::.|:.|:..|:.   |....|          
 Frog  1968 VQQYKVNYAPLLGTRPTESVVVPGNTHNALLEQLIPDTQYSVNVVA---LYADGE---------- 2019

  Fly  1433 TWPDFGVPNP------PQTLVRFVRAFRDRIGAEQRPIVVHCSAGVGRSGTFITLDRILQQINTS 1491
                 |.|:|      |::..:.:|.|    |.....:.|:.....|....:    ||:......
 Frog  2020 -----GDPSPGEGKTLPRSGPKNIRVF----GETTNSLSVNWDHADGPVQQY----RIIYSPTVG 2071

  Fly  1492 DYVDIFGIVYAMRKERVWM-VQTEQQYICIHQCLLAV--------LEGKENIVG---PAREMHDN 1544
            |.:|.:..|...|...|.. :.::..|   ...::||        |.||...||   |......:
 Frog  2072 DPIDEYTTVPGRRNNVVLQPLLSDTPY---KITVVAVYADGDGGQLTGKGRTVGLIAPRNLQVSD 2133

  Fly  1545 EGYEGQQVQLD----------------ENGDVVATIEGHLSHHDLQQAEAEAIDDENAAILHDD- 1592
            |.|...:|..|                ::.:.:....|.:|.:.||........|......:|. 
 Frog  2134 EWYTRFRVSWDRIPSPVLGYKLVYQPRDSDESMEVFVGDVSSYTLQNLSPGTTYDVKVYAQYDTG 2198

  Fly  1593 -QQPLTSSFTGHHTHMPPTTS------------------------MSSFGGGGGGHTNVDAPDRX 1632
             ..||:...|..:.::...||                        ::...|..|....|...:. 
 Frog  2199 LSGPLSGPGTTLYLNVTDLTSYQVSWDSFCIRWTPHRSATSYRLKLNPVDGSRGQEITVTGSESS 2263

  Fly  1633 H--SVVNQSDNNNSVVIVLVDN--------------------------------KPSSMICKDSK 1663
            |  :.:||.....:.|.|...|                                .|:..:||.:|
 Frog  2264 HCFNGLNQDTQYTATVFVQTPNLEGRGVSIDERTLIKPTESPTTPPAPPPPPTIPPAREVCKGAK 2328

  Fly  1664 GGNIDVLESQQQQQQQQQQQPNQGGHNITTISAINGYNT--LQHRRKSQLITFSSSSCDIKNSLS 1726
            ...:.:::|..........:..|...|  ||.|.:..|.  :|       ::|...|.|.:....
 Frog  2329 ADIVFLIDSSWSIGDDNYNKVRQFIFN--TIGAFDVINPSGIQ-------VSFVQFSDDAQTEFK 2384

  Fly  1727 -HEYINGSN--GSAANGPPSSGSGSGSGPGSNRASRANVRLSFAEEDVMILPQNHSQQS------ 1782
             :.|.:.|.  |:.||.....|:           ::....|.|..|.||.: :|..::|      
 Frog  2385 LNTYADKSQALGALANIRYKGGN-----------TKTGKALKFVHEKVMTV-ENGMRRSVPRVLV 2437

  Fly  1783 -----NHQDDEVFTRRRSLLEVE--------IGVEVGEDGELAPHEMEEDLEEEDEDEELYMHDE 1834
                 ..|||.    ::|.|:::        |||...:..||      .::..:..:..:::.|:
 Frog  2438 VVTDGRSQDDV----KKSALDIQQSGFSVFVIGVADVDYNEL------RNIGSKPSERHVFIVDD 2492

  Fly  1835 FETHIDTKSNNAN 1847
            |:.....:.|..|
 Frog  2493 FDAFEKIEDNLIN 2505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470 25/118 (21%)
fn3 220..304 CDD:278470 27/171 (16%)
fn3 315..391 CDD:278470 21/89 (24%)
FN3 405..494 CDD:238020 25/95 (26%)
FN3 511..574 CDD:238020 23/151 (15%)
FN3 583..671 CDD:238020 29/99 (29%)
fn3 683..753 CDD:278470 19/102 (19%)
fn3 787..850 CDD:278470 20/73 (27%)
fn3 866..935 CDD:278470 15/75 (20%)
fn3 961..1043 CDD:278470 15/84 (18%)
PTPc 1272..1525 CDD:214550 57/341 (17%)
PTPc 1298..1525 CDD:238006 48/284 (17%)
col12a1XP_002936246.3 fn3 26..97 CDD:394996
vWA_collagen_alphaI-XII-like 139..302 CDD:238759 9/52 (17%)
fn3 336..415 CDD:394996 23/82 (28%)
vWA_collagen_alphaI-XII-like 439..602 CDD:238759 18/162 (11%)
FN3 634..720 CDD:238020 17/85 (20%)
fn3 725..804 CDD:394996 23/93 (25%)
fn3 816..893 CDD:394996 24/83 (29%)
FN3 907..993 CDD:238020 15/85 (18%)
FN3 1002..1076 CDD:238020 9/73 (12%)
FN3 1089..1176 CDD:238020 28/96 (29%)
vWA_collagen_alphaI-XII-like 1198..1361 CDD:238759 28/167 (17%)
FN3 1387..1473 CDD:238020 24/89 (27%)
FN3 1477..1549 CDD:214495 15/72 (21%)
FN3 1571..1648 CDD:238020 15/87 (17%)
fn3 1659..1732 CDD:394996 25/132 (19%)
FN3 1762..1835 CDD:238020 17/100 (17%)
FN3 1854..1929 CDD:238020 15/77 (19%)
fn3 1944..2023 CDD:394996 12/96 (13%)
fn3 2035..2112 CDD:394996 15/87 (17%)
FN3 2125..2204 CDD:238020 12/78 (15%)
fn3 2214..2283 CDD:394996 10/68 (15%)
vWA_collagen_alphaI-XII-like 2329..2493 CDD:238759 35/194 (18%)
TSPN 2527..2718 CDD:214560
Collagen 2768..2828 CDD:396114
Collagen 2810..2902 CDD:396114
Collagen 2960..3052 CDD:396114
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I11613
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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