DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp10D and tnca

DIOPT Version :9

Sequence 1:NP_996413.2 Gene:Ptp10D / 32115 FlyBaseID:FBgn0004370 Length:1990 Species:Drosophila melanogaster
Sequence 2:XP_021332057.1 Gene:tnca / 100149028 ZFINID:ZDB-GENE-130530-849 Length:2336 Species:Danio rerio


Alignment Length:1694 Identity:333/1694 - (19%)
Similarity:580/1694 - (34%) Gaps:436/1694 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 PPSNLSVQVRSGKNAIILWSPPTQGSYTAFKIKVLGLSEASSSYNRTFQVNDNTFQHSVKELTPG 189
            ||.:|:|...|.:...:.|    :......:..:..:..|.......|:|..:....:|.||.||
Zfish   594 PPEDLTVTDVSTQKVNLTW----RNEMLVTEYLITYVPTAPGGLQMDFRVAGDRTSATVSELEPG 654

  Fly   190 ATYQVQAYTIYDGKESVAYTSRNFTTKPNTPGKFIVWFRN--ETTLLVLWQP---PYPAG--IYT 247
            ..|.:..|.:.:.|.|:..::|..|..|...|   :.|.:  ::|:.|:|:.   |:...  |:.
Zfish   655 IEYLINVYAVLNNKRSIPVSARVAT
YLPQPEG---LRFTSITDSTVEVVWEQLNFPFDGWELIFR 716

  Fly   248 HYKVSIEPPDANDSVLYVEKEGEPPG---PAQAAF--KGLVPGRAYNISVQTMSEDEISLPTTAQ 307
            :.|               |:.|:...   |:|..|  :||.||:.|.:::..:..:.....|::.
Zfish   717 NTK---------------EENGKIVNNLTPSQTTFEQQGLGPGQEYEVTLSVIKNNTRGPETSST 766

  Fly   308 YRTVPLRPLNVTFDRDFITSNSFRVLWEAPKGISEFDKYQVSVATTRRQSTVPRSNEPVAF---- 368
            ..|....|..:  :...:|..|..:.|..|  ::..|.::||..    .||.|..:..|..    
Zfish   767 VVTRIDSPAQI--EVADVTDRSAVISWSKP--LAPVDGFKVSYG----PSTDPLIHRDVELSASE 823

  Fly   369 --FDFRDIAEPGKTFNVIVKTVSGKVTSWPATGDVTLRPLPVRNLRSINDDKTNTMI-ITWEADP 430
              :...|: :|...:.|.:.:..|.|||.|.....|........||::  |:|::.| :.|: :.
Zfish   824 TQYSLEDL-KPDTQYRVALSSQRGDVTSEPIIESFTTGLDAPSELRAV--DQTDSSITLEWK-NS 884

  Fly   431 ASTQDEYRIVY-------HELETF---NGDTSTLTTDRTRFTLESLLPGRNYSLSVQAVSKKMES 485
            .|:.|.|||.|       |..:.|   .|||       |..|:..|.||..|.:.|.||..:.||
Zfish   885 RSSIDGYRIKYGPIAGGAHGEDMFPKKAGDT-------TWATITGLKPGTEYGIGVTAVQNERES 942

  Fly   486 NETSIFVVTRPSSPIIEDLK---SIRMGLNISWKSDVNSKQEQYEVLY-SRNGTSDLRTQKTKES 546
            ...:...:|....|  .||:   |....:::.||.. .:|...|.:.| |..|..:........|
Zfish   943 EPATTNALTDLDPP--RDLEVQSSTETSVDLVWKRP-RAKISTYRLAYVSVEGRREEIELPASAS 1004

  Fly   547 RLVIKNLQPGAGYELKVFAVSHDLRSEPHA----------YFQAVYP------------------ 583
            ...:..|.||..|.:.:.|.....||.|..          |....:|                  
Zfish  1005 TSTLSGLMPGMSYTVTLVAERGHRRSAPATVTASTASFTFYLANAFPEFGSAKGADDNIISFVSL 1069

  Fly   584 -------------NP-PRNMTIETVRSNSVLVHWSPPESGEFTEYSIRYRTDSEQQW---VRLPS 631
                         :| ..:.||..|.|:...:.|...:...|..:::.. ||....|   |.| :
Zfish  1070 ENSETPFSGSGLEDPIGGSFTISNVSSHGFDLMWDSNKLSGFDSFTVEV-TDFSGMWKEEVHL-N 1132

  Fly   632 VRSTEADITDMTKGEKYTIQVNTVSFGVESPVPQEVNTTVPPNPVSNIIQL-------------- 682
            .:..:..|..:....:|.:::..:|....|.:.:.|..|.|.:...:::.|              
Zfish  1133 GKVNDTKIRGLKSSTEYQVRLYGLSNNQRSSLLEAVAVTAPKSTSPDVVALTVKRVSAAQPSVST 1197

  Fly   683 ---------------------VDSRNITLEWPKPEGRVESYILKWWPSDNPGRVQTKNVSENKSA 726
                                 |.:.::.|.|..||....|:|::            .|.:.|.|.
Zfish  1198 STLLTEDFKAEEPLSDLKVTEVGANSLRLSWQAPERAFSSFIIE------------LNSTSNTSK 1250

  Fly   727 DDLSTVRVLIGEL----MPGVQYKFDIQTTSYGILSGITSLYPRTMPLIQSDVVVANGEKEDERD 787
            |.:..|.   ||.    :.|:....:.:.|.||..:|     .::.|:   .|.|...|::.:..
Zfish  1251 DSIIKVS---GEARHAHVEGLNADMNYEITLYGRKAG-----EKSQPI---SVFVKTEEQKPQIG 1304

  Fly   788 TITLSYTPTP--------QSSSKFDIYRFSLGDAEIRDKEKLANDTD-RKVTFTGLVPGRLYNIT 843
            :::||.....        :....||.:...:.::...:::.|:...| |.:..:||.||..|.||
Zfish  1305 SLSLSDVSWDSFNVSWIIEDGPAFDSFVIEVANSAGPERQNLSVSGDARDLWMSGLSPGTSYMIT 1369

  Fly   844 VWTVSGG--VASLPIQRQDRLYPEPITQLHATNITDTEISLRWDLPKGEYNDFDIAYLTA----- 901
            ::.|..|  :.|:.::......| .:..|:.:|:|.....:.|:..|||...|.:..:.:     
Zfish  1370 LYGVHQGSILGSINVEAATDRAP-AMGNLYVSNVTSQSFFVSWNDTKGEIERFVLEIIDSSWQQE 1433

  Fly   902 --DNLLAQNMTTRNEITISDLRPHRNYTFTVVVRSGTESSVLRSSSPLSASFTTNEAVPGRVERF 964
              :..|:|::   ....|:.|||..:|...|       :.|::.....|.|...:.|....:...
Zfish  1434 PIEYNLSQSV---QSYEITGLRPTTDYIAYV-------TGVMKGRRTDSVSAVASTAAEPDLSGL 1488

  Fly   965 HPTDVQPSEINFEWSLPSSEANGVIRQFSIAYTN-INNLTDAGMQDFESEEAFG------VIKNL 1022
            ..::|....::..|           |....|:.| |..:.::.:....|...||      |:..|
Zfish  1489 VVSNVTSDSVSLSW-----------RTGEKAFDNFIVEVRESALPSQASGRTFGAGVRSAVLNGL 1542

  Fly  1023 KPGETYVFKIQAKTAIGFGPEREYRQTMPILAPPRPATQVVPTEVYRSSSTIQIRFRKNYFSDQN 1087
            :...||..|:.|..|   |...:...|:....|.....:||.:|...:|.|:.......:|....
Zfish  1543 RGNTTYQIKLYATVA---GANTDALTTVVTTEPKPELGRVVVSERLANSLTLSWSTLSGHFDGFA 1604

  Fly  1088 GQV----RMYTIIV--AEDDAKNAS--GLEMPSWLDVQSYSVWLPYQAIDPYY--------PFEN 1136
            .:|    ::|.::.  .....:|.|  ||...:..|:..|.|....|....|:        ..||
Zfish  1605 ARVSDREQLYDVVELRLSGTERNTSVQGLVDSTVYDIMFYGVSHGRQTPSVYFNTSTASLPKVEN 1669

  Fly  1137 RSVEDFT-IGTENCDNHKIGYCNGPLK----------------------------SGTTYRVKVR 1172
            .:|.|.| .|.....:...|:.:..:|                            :|..|.|.|.
Zfish  1670 LTVWDVTPYGFRVSWDADSGFSHFQVKVSDSGQLLEPQELVVPGNEASLEVLGLITGIGYEVSVT 1734

  Fly  1173 AFTGADKFTDTAYSFPIQTDQDNTSLIVAITVPLTIILVLLVTLLFYKRRRNNCRKTTKDS---- 1233
            ..:|..     ..|.||.|        ||:|.....|..|.|:.:..:..|.:.  ||:|.    
Zfish  1735 GVSGTG-----LRSRPITT--------VAVTEAEPEIEHLFVSDVTPESFRLSW--TTEDDVFDR 1784

  Fly  1234 ---RANDNMSLPDSVIEQNRPILIKNFAEHYRLMSADSDFRF--------SEEFE-ELKHV---G 1283
               :..|:..|                 .|.|..|...|.|.        ..|:| ||..|   .
Zfish  1785 FVLKVRDSRKL-----------------SHPREFSMSGDERTKVLTQLLGGTEYEIELYGVTLER 1832

  Fly  1284 RDQPCT--------------FAD-----------LPCNRPKNRFTNILPYDHSRFKLQPVDDDEG 1323
            |.||.|              |:|           ||..:|.:....::|.......:..||..: 
Zfish  1833 RSQPVTAVVKTGLGALRDLHFSDITDTSAVVYWTLPRAQPDSYRITLIPIQGGSPMIVQVDGSQ- 1896

  Fly  1324 SDYINANYVPGHNSPREFIVTQGPLHS--TRDDFWRMCWESNSRAIVMLTRC-----FEKGREKC 1381
            |.....|.:||.......|..:|...|  ..|.|........|..:|.:|..     ::......
Zfish  1897 SQVSLRNLIPGETYQVSVIAVKGLEESEPVSDTFTTALDTPRSLTVVNVTDSSALLFWQPAVATV 1961

  Fly  1382 DQY---WPNDTVPVFYGDIKVQI--------LNDSHYADWVMTEFMLCRGSEQRILRHFHFTTWP 1435
            |.|   :..||||    .|..|:        :|....|..........|..|:.:.....|||  
Zfish  1962 DGYMITYSADTVP----PISEQVSGNTVEFEMNSLAPATQYTVSVYAIRDREKSLPATADFTT-- 2020

  Fly  1436 DFGVP-----------------NPPQTLVR-FVRAFRDRIGAEQRPIVV------HCSAGVGRSG 1476
            |...|                 .||:..:. :...|::. .|:.|.::|      |..:.: ||.
Zfish  2021 DVDAPRDLVASNIQTDSAVLSWTPPRAAITGYTLTFQNS-DADVREVIVDPSVASHTLSNL-RST 2083

  Fly  1477 TFITLDRILQQIN--------TSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQCLLAVLEGKEN 1533
            |..|:  |||.::        ::::..: |::|...::                |..|:|.| |.
Zfish  2084 TKYTV--ILQAVSEDKRSRSISTEFTTV-GMLYGHPRD----------------CSEALLNG-ET 2128

  Fly  1534 IVGP 1537
            ..||
Zfish  2129 SSGP 2132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp10DNP_996413.2 fn3 124..205 CDD:278470 17/79 (22%)
fn3 220..304 CDD:278470 18/95 (19%)
fn3 315..391 CDD:278470 15/81 (19%)
FN3 405..494 CDD:238020 28/99 (28%)
FN3 511..574 CDD:238020 15/63 (24%)
FN3 583..671 CDD:238020 18/122 (15%)
fn3 683..753 CDD:278470 15/73 (21%)
fn3 787..850 CDD:278470 15/71 (21%)
fn3 866..935 CDD:278470 16/75 (21%)
fn3 961..1043 CDD:278470 17/88 (19%)
PTPc 1272..1525 CDD:214550 63/339 (19%)
PTPc 1298..1525 CDD:238006 50/276 (18%)
tncaXP_021332057.1 EGF_2 189..217 CDD:285248
EGF_2 316..341 CDD:285248
EGF_2 377..403 CDD:285248
EGF_2 408..434 CDD:285248
EGF_2 470..496 CDD:285248
EGF_2 496..527 CDD:285248
EGF_2 530..558 CDD:285248
FN3 593..679 CDD:238020 19/88 (22%)
fn3 682..763 CDD:306538 19/98 (19%)
fn3 772..852 CDD:306538 19/88 (22%)
FN3 862..947 CDD:238020 28/94 (30%)
FN3 954..1036 CDD:238020 20/84 (24%)
FN3 1087..1171 CDD:238020 16/85 (19%)
fn3 1210..1289 CDD:306538 19/98 (19%)
fn3 1301..1376 CDD:306538 15/74 (20%)
fn3 1392..1464 CDD:306538 17/82 (21%)
FN3 1486..1570 CDD:238020 18/97 (19%)
fn3 1574..1649 CDD:306538 15/74 (20%)
fn3 1665..1740 CDD:306538 13/74 (18%)
fn3 1756..1829 CDD:306538 18/91 (20%)
fn3 1846..1925 CDD:306538 15/79 (19%)
fn3 1935..2013 CDD:306538 15/81 (19%)
fn3 2023..2096 CDD:306538 15/76 (20%)
FReD 2114..2323 CDD:238040 7/36 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.