DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Met and NCOA1

DIOPT Version :10

Sequence 1:NP_511126.2 Gene:Met / 32114 FlyBaseID:FBgn0002723 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_003734.3 Gene:NCOA1 / 8648 HGNCID:7668 Length:1441 Species:Homo sapiens


Alignment Length:791 Identity:154/791 - (19%)
Similarity:263/791 - (33%) Gaps:203/791 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 SGSG-SSSDPAN-------GREARNLA---EKQRRDKLNASIQELATM----VPHAAESSRRLDK 75
            ||.| |||||||       |.....||   ||:||::.|..::|||.:    :......|.:.||
Human     2 SGLGDSSSDPANPDSHKRKGSPCDTLASSTEKRRREQENKYLEELAELLSANISDIDSLSVKPDK 66

  Fly    76 TAVLRFATHGLRLQYVFGKSASRRRKKT--GLKGTGMSASPVGDLPNPSLHLTDTLMQLLDCCFL 138
            ..:|:.....::|.    |...:.:..|  .::.:.:|:|..|.:...|  |...|::.||..|.
Human    67 CKILKKTVDQIQLM----KRMEQEKSTTDDDVQKSDISSSSQGVIEKES--LGPLLLEALDGFFF 125

  Fly   139 TLTCSGQIVLVSTSVEQLLGHCQSDLYGQNLLQITHPDDQDLLRQQLIPRDIETLFYQHQHHQQQ 203
            .:.|.|:||.||.:|...||:.|.:|...::..|.|..|.....:.|:|:.:           ..
Human   126 VVNCEGRIVFVSENVTSYLGYNQEELMNTSVYSILHVGDHAEFVKNLLPKSL-----------VN 179

  Fly   204 GHNPQQHSTSTSASTSGSDL-----EEEEMETEE----------HRLGRQQGEADDDEDHP---- 249
            |....|.:|..::.|....:     :|...|.:|          ..:.:.:...:|.||..    
Human   180 GVPWPQEATRRNSHTFNCRMLIHPPDEPGTENQEACQRYEVMQCFTVSQPKSIQEDGEDFQSCLI 244

  Fly   250 -YNRRTPSPRRMAHLATIDDRLRMDRRCFTVRLARASTRAEATRHYE---RVKIDGCFR---RSD 307
             ..||.|.|..:..:.:.  ..:.|.....:.:..:|.||.....:|   |..|...|:   |..
Human   245 CIARRLPRPPAITGVESF--MTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREP 307

  Fly   308 S--------SLTGGAAA--NYPIVSQLIRRSRNNNMLAAAA--------------------AVAA 342
            |        .:|.|.|:  :|..:      ..:..||:|..                    .:..
Human   308 SYARQLFQEVMTRGTASSPSYRFI------LNDGTMLSAHTKCKLCYPQSPDMQPFIMGIHIIDR 366

  Fly   343 EAATVPPQHDAIAQAALHGISGNDIVLVAMAR-VLREERPPEETEGTVGLTIYR-QPEPYQLEYH 405
            |.:.:.||.|..:..::..::.:....::.|. |.|....|......|...|.| |........|
Human   367 EHSGLSPQDDTNSGMSIPRVNPSVNPSISPAHGVARSSTLPPSNSNMVSTRINRQQSSDLHSSSH 431

  Fly   406 TRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQMYDCNSDYGESCYRL 470
            :..........|.....:||.                        |||.|        |::    
Human   432 SNSSNSQGSFGCSPGSQIVAN------------------------VALNQ--------GQA---- 460

  Fly   471 LSRNGRFIYLHTKGFLEVDRGSNKVHSFLCVNTLLDEEAGRQKVQEMKEK----FSTIIKAEMPT 531
                                .|...:..|.:|....|..|....|.|..:    .....:..||.
Human   461 --------------------SSQSSNPSLNLNNSPMEGTGISLAQFMSPRRQVTSGLATRPRMPN 505

  Fly   532 QSSSPDLPASQAPQQLERIVLYLIENLQKSVDSAETVGGQGMESLMDDGYSSPANTLTLEELAPS 596
            .|..|::....:|..:....   ..|..:|..:......|||....::.....|::..|.:::..
Human   506 NSFPPNISTLSSPVGMTSSA---CNNNNRSYSNIPVTSLQGMNEGPNNSVGFSASSPVLRQMSSQ 567

  Fly   597 PTPALALVPPAPSSVKSSISKSVSVVNVTAARKFQQE--------------HQKQRERDREQLKE 647
            .:|:...:.||.:..|.: .:..|::|    ...|.:              |...|..|.:....
Human   568 NSPSRLNIQPAKAESKDN-KEIASILN----EMIQSDNSSSDGKPLDSGLLHNNDRLSDGDSKYS 627

  Fly   648 RTNS------TQGVIRQL------SSCLSEAETASCILSPASSLSASEAPDTPDPHSNTSPPPSL 700
            :|:.      |....:||      :||   .:..||..:..|:.:.|.....|..||      ||
Human   628 QTSHKLVQLLTTTAEQQLRHADIDTSC---KDVLSCTGTSNSASANSSGGSCPSSHS------SL 683

  Fly   701 HTRPSVLHRTL 711
            ..|..:|||.|
Human   684 TERHKILHRLL 694

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MetNP_511126.2 bHLH_PAS 38..89 CDD:381397 14/57 (25%)
PAS 137..>186 CDD:238075 15/48 (31%)
PAS_11 401..510 CDD:464214 13/108 (12%)
NCOA1NP_003734.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..39 17/36 (47%)
bHLH-PAS_NCoA1_SRC1 27..87 CDD:381518 16/63 (25%)
LXXLL motif 1 46..50 2/3 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 83..105 3/21 (14%)
LXXLL motif 2 112..116 1/3 (33%)
PAS 120..213 CDD:238075 25/103 (24%)
PAS_11 259..370 CDD:464214 18/118 (15%)
Interaction with STAT3. /evidence=ECO:0000269|PubMed:11773079 361..567 40/264 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 368..443 12/74 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 457..477 5/51 (10%)
NCOA_u2 468..590 CDD:465223 22/125 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 561..585 5/23 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 597..626 4/28 (14%)
SRC-1 629..708 CDD:462615 20/75 (27%)
LXXLL motif 3 633..637 0/3 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 662..723 12/39 (31%)
LXXLL motif 4 690..694 3/3 (100%)
DUF4927 741..818 CDD:465083
LXXLL motif 5 749..753
Interaction with CREBBP 781..988
LXXLL motif 6 913..917
Nuc_rec_co-act 924..969 CDD:462608
Med15 974..>1287 CDD:312941
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1143..1188
DUF1518 1149..1205 CDD:462174
DUF1518 1212..1268 CDD:462174
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1409..1441
LXXLL motif 7 1435..1439
Blue background indicates that the domain is not in the aligned region.

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