DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Met and Arntl

DIOPT Version :9

Sequence 1:NP_001285132.1 Gene:Met / 32114 FlyBaseID:FBgn0002723 Length:716 Species:Drosophila melanogaster
Sequence 2:XP_006507308.1 Gene:Arntl / 11865 MGIID:1096381 Length:638 Species:Mus musculus


Alignment Length:734 Identity:158/734 - (21%)
Similarity:259/734 - (35%) Gaps:223/734 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 TGSTGSAGSTGSGSGSGSGSG--------------SSSDP-------------ANGREARNLAEK 46
            :||.|::|...:....||.:.              ...||             .|.|||.:..||
Mouse    25 SGSLGTSGVDCNRKRKGSATDYQLDDFAFEESMDTDKDDPHGRLEYAEHQGRIKNAREAHSQIEK 89

  Fly    47 QRRDKLNASIQELATMVPHAAESSRRLDKTAVLRFATHGLRLQYVFGKSASRRRKKTGLKGTGMS 111
            :||||:|:.|.|||::||.....||:|||..|||.|...::..    :.|:....:...|.|.:|
Mouse    90 RRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTL----RGATNPYTEANYKPTFLS 150

  Fly   112 ASPVGDLPNPSLHLTDTLMQLLDCCFLTLTCSGQIVLVSTSVEQLLGHCQSDLYGQNLLQITHPD 176
            ..   :|.:..|...|..:.::.|      ..|:|:.||.||.::|.:.|:||.||:|....||.
Mouse   151 DD---ELKHLILRAADGFLFVVGC------DRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPK 206

  Fly   177 DQDLLRQQLIPRDIETLFYQHQHHQQQGHNPQQHSTSTSASTSGSDLEEEEMETEEHRLGRQQGE 241
            |...:::||                                 |.||....|      ||      
Mouse   207 DIAKVKEQL---------------------------------SSSDTAPRE------RL------ 226

  Fly   242 ADDDEDHPYNRR-TPSPRRMAHLATIDDRLRMDRRCFTVRLA--RASTRAEATRHYERVKIDGCF 303
            .|.....|.... ||.|.|:...|         ||.|..|:.  |.|.:.|..............
Mouse   227 IDAKTGLPVKTDITPGPSRLCSGA---------RRSFFCRMKCNRPSVKVEDKDFASTCSKKKAD 282

  Fly   304 RRSDSSL-TGGAAANYPIVSQLIRRSRNNNMLAAAAAVAAEAATVPPQHDAIAQAALHGISGNDI 367
            |:|..:: :.|...::|.....:.....                  |.::..          |..
Mouse   283 RKSFCTIHSTGYLKSWPPTKMGLDEDNE------------------PDNEGC----------NLS 319

  Fly   368 VLVAMARVLREERPPEETEGTVGLTIYRQPEPYQLEYHTRHLIDGSIIDCDQRIGLVAGYMKDEV 432
            .|||:.| |.....|:...|.:.:.        .:||.:||.|||..:..|||...:..|:..|:
Mouse   320 CLVAIGR-LHSHMVPQPANGEIRVK--------SMEYVSRHAIDGKFVFVDQRATAILAYLPQEL 375

  Fly   433 RNLSPFCFMHLDDVRWVIVALRQMYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEVDRGSNKVHS 497
            ...|.:.:.|.||:..:....||:.........:||:...::|.||.|.::.|..::..:.:|..
Mouse   376 LGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEY 440

  Fly   498 FLCVNTLLDEEAGRQKVQEMKEKFSTIIKAEMPTQSSSPDLPASQAPQQLERIVLYLIENLQKSV 562
            .:..|                    |::.|.: .:...|..|...||.       :.::::..|.
Mouse   441 IVSTN--------------------TVVLANV-LEGGDPTFPQLTAPP-------HSMDSMLPSG 477

  Fly   563 DSAETVGGQGMESLMDDGYSSPANTLTLEELAPSPTPALALVPPAPSSVKSSISKSVSVVNVTAA 627
            :.:..|||             |..|        .||     ||..|...::...|    :....|
Mouse   478 EDSFVVGG-------------PKRT--------HPT-----VPGIPGGTRAGAGK----IGRMIA 512

  Fly   628 RKFQQEHQKQRERDREQLKERTNSTQGVIRQLSSCLSEAET----ASC-----ILS------PAS 677
            .:..:.|         :::..:.|:.|     ||.|:...|    ||.     ||:      |::
Mouse   513 EEIMEIH---------RIRGSSPSSCG-----SSPLNITSTPPPDASSPGGKKILNGGTPDIPST 563

  Fly   678 SLSASEAPDTPD-PHSNTS 695
            .|...:|.:||. |:|::|
Mouse   564 GLLPGQAQETPGYPYSDSS 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MetNP_001285132.1 HLH 38..87 CDD:238036 25/48 (52%)
PAS 137..>186 CDD:238075 17/48 (35%)
PAS_11 403..510 CDD:291273 27/106 (25%)
ArntlXP_006507308.1 bHLH-PAS_ARNTL_PASD3 74..137 CDD:381444 27/66 (41%)
PAS 153..260 CDD:366402 39/166 (23%)
PAS_11 346..448 CDD:373151 28/121 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834644
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23042
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.840

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