DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1703 and ABCF3

DIOPT Version :9

Sequence 1:NP_001285130.1 Gene:CG1703 / 32112 FlyBaseID:FBgn0030321 Length:901 Species:Drosophila melanogaster
Sequence 2:NP_176636.1 Gene:ABCF3 / 842763 AraportID:AT1G64550 Length:715 Species:Arabidopsis thaliana


Alignment Length:679 Identity:257/679 - (37%)
Similarity:372/679 - (54%) Gaps:84/679 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 LSEKVAAVSLKEKTPE-----------------PVPKAEPEPESEPQPDEEADAEVDSKFEESKE 289
            ||:|.....|.:.||.                 ||.|.:|||...|...|...|:::        
plant    73 LSDKFGKHGLVKPTPTVRSLAMPVRMNDGMDDGPVKKKKPEPVDGPLLTERDLAKIE-------- 129

  Fly   290 AKEKKLTHKEKKKQKKQQEYERQM---ELMTKKGGAGHSDLDNNFTMSQVQKSAGQKAALEQAVD 351
                    :.|||..:|:|.:.|.   |:...|.|..        |:| |....|..:|:.   |
plant   130 --------RRKKKDDRQRELQYQQHVAEMEAAKAGMP--------TVS-VNHDTGGGSAIR---D 174

  Fly   352 IKIENFTISAKGNDLFVNANLLIAHGRRYGLVGPNGHGKTTLLRHIATRAF-AIPPNIDVLLCEQ 415
            |.::||.:|..|.||.|:.::.::.||.|||||.||.||||.||::|..|. .||.|..:|..||
plant   175 IHMDNFNVSVGGRDLIVDGSITLSFGRHYGLVGRNGTGKTTFLRYMAMHAIEGIPTNCQILHVEQ 239

  Fly   416 EVVATDKTAINTILEADVRRTEMLK-------KADELE----------KQFVAGDLTVQEELNDT 463
            |||....||:..:|..|:.||::|:       |..|.|          |..|.||| :.:.|.:.
plant   240 EVVGDKTTALQCVLNTDIERTKLLEEEIQILAKQRETEEPTAKDGMPTKDTVEGDL-MSQRLEEI 303

  Fly   464 FAELKAIGAYSAEARARRILAGLGFSKEMQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTN 528
            :..|.||.||:|||||..|||||.|:.|||.:.||.||||||||::|||||::||.||:||||||
plant   304 YKRLDAIDAYTAEARAASILAGLSFTPEMQLKATNTFSGGWRMRIALARALFIEPDLLLLDEPTN 368

  Fly   529 HLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRR 593
            ||||:||:||:.||..|.||.::|||.:.||:.|..:||||..:||..|||||.:|::    .|.
plant   369 HLDLHAVLWLETYLTKWPKTFIVVSHAREFLNTVVTDIIHLQNQKLSTYKGNYDIFER----TRE 429

  Fly   594 EMIKEYEKQEKRLRELKAHGQS--KKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKE 656
            |.:|..:|..:.....::|.|:  .|.....::.||.:.:.|...:....|:       :....:
plant   430 EQVKNQQKAFESSERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLAHVDQ-------VINDPD 487

  Fly   657 YIVKFRFPEPSQLQ-PPILGVHNVTFAFPSQKPLFIKVDFGIDLTSRVAIVGPNGVGKSTFLKLL 720
            |  ||.||.|.... |||:...:.:|.:|....||..::|||||.||:|:|||||:||||.|||:
plant   488 Y--KFEFPTPDDKPGPPIISFSDASFGYPGGPLLFRNLNFGIDLDSRIAMVGPNGIGKSTILKLI 550

  Fly   721 LGELEPQEGEQRKNHRLHVGRFDQHSGEHLTAEESAAEYLQRLF-NLPHEKARKALGSFGLVSHA 784
            .|:|:|..|...::.::.|..|.||..:.|....:...|:.|.: .:|.:|.|..|||.|:..:.
plant   551 SGDLQPSSGTVFRSAKVRVAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRSHLGSLGVTGNL 615

  Fly   785 HTIKMKDLSGGQKARVALAELCLSAPDVLILDEPTNNLDIESIDALAEAINEYEGGVIIVSHDER 849
            ....|..||||||:|||.|::....|.:|:||||:|:||:::::||.:.:..::||:.:|||||.
plant   616 ALQPMYTLSGGQKSRVAFAKITFKKPHLLLLDEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEH 680

  Fly   850 LIRETGCTLYVIEDQTINEIVGEFDDYRK 878
            ||..:...|:|:.|..|....|.|.||:|
plant   681 LISGSVDELWVVSDGRIAPFHGTFHDYKK 709

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1703NP_001285130.1 Uup 351..879 CDD:223562 228/550 (41%)
ABCF_EF-3 352..573 CDD:213188 117/238 (49%)
ABC_tran_Xtn 567..>611 CDD:289608 15/43 (35%)
ABCF_EF-3 676..865 CDD:213188 76/189 (40%)
ABCF3NP_176636.1 PLN03073 1..713 CDD:215558 257/679 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0488
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53504
OrthoDB 1 1.010 - - D580544at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.830

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