DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1703 and abcf3

DIOPT Version :9

Sequence 1:NP_001285130.1 Gene:CG1703 / 32112 FlyBaseID:FBgn0030321 Length:901 Species:Drosophila melanogaster
Sequence 2:NP_001120542.1 Gene:abcf3 / 100145696 XenbaseID:XB-GENE-6087270 Length:711 Species:Xenopus tropicalis


Alignment Length:779 Identity:264/779 - (33%)
Similarity:401/779 - (51%) Gaps:129/779 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 DFSDEDKPELDLD--------------DLDNEEDEVEVVAVKPASKKSKKKQQAQQKNMFAMSDD 192
            |....:.|:||.:              |.::|.|..|.|.                         
 Frog     6 DILRNEFPQLDAELLQYVTDILDSGRADFESETDLFEAVG------------------------- 45

  Fly   193 EEDEVADDLPNDSEEEEK-EQLSNKAAKESKKEQQKQPEKEVEEQKVEQVLSEKVAAVSLKEKTP 256
               |:..|:..|:::::. ..:..:..:....|..:.|.:       :|||.:  |.:.|     
 Frog    46 ---ELLQDVSRDTKDDDDIRDICQRIYRAMHLENHQLPAQ-------DQVLLQ--APIQL----- 93

  Fly   257 EPVPKAEPEPESEPQPDEEADAEVDS----KFEESKEAKEKKLTHKEKK-KQKKQQEYERQMELM 316
                       |:.....|.|.::.:    |.::|.....|:|...|.| |.|:::..||.::..
 Frog    94 -----------SKISDSYEVDEKIQNVMLLKKDQSSTVDVKRLEKAEAKLKSKQEKRSERDLQKS 147

  Fly   317 TKKGGAGHSDLDNNFTMSQVQKSAGQKAALEQ----------AVDIKIENFTISAKGNDLFVNAN 371
            |           .|..|.:.  ||.|.|:.::          :.||:||||.:|.....|...|.
 Frog   148 T-----------GNVVMEEA--SASQAASKKENRIESSGKNKSYDIRIENFDVSFGERVLLTGAE 199

  Fly   372 LLIAHGRRYGLVGPNGHGKTTLLRHIATRAFAIPPNIDVLLCEQEVVATDKTAINTILEADVRRT 436
            |.:|.||||||||.||.||||||:.:|.|:..:|.:|.:|..||||...:..|:.::||.|..|.
 Frog   200 LHLATGRRYGLVGRNGLGKTTLLKMLAGRSLRVPSHISILHVEQEVAGDETPALQSVLECDTLRE 264

  Fly   437 EMLKKADELEKQFVA--GDLTVQEELNDTFAELKAIGAYSAEARARRILAGLGFSKEMQDRPTNK 499
            .:|::..||..:..|  ||.:....|::.:::|:.|.|..|.|||..|||||||...||.:.|.:
 Frog   265 RLLQEEKELNTKISAGRGDGSESLRLSEIYSKLEEIEADKAPARASVILAGLGFKHSMQQQMTKE 329

  Fly   500 FSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCN 564
            ||||||||::|||||:..|.||:||||||.||:.|::||:.|||.|..|:|:||||::||:.|..
 Frog   330 FSGGWRMRLALARALFARPDLLLLDEPTNMLDVRAILWLECYLQTWPSTILVVSHDRNFLNAVAT 394

  Fly   565 EIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRELKAHGQ---------SKKAAE 620
            :|:||..::|:.|:||:..|.|...::.:...:|||.|:    :.:.|.|         :.:|::
 Frog   395 DIVHLHSQRLEAYRGNFESFLKTKEERLKNQQREYEAQQ----QYREHIQVFIDRFRYNANRASQ 455

  Fly   621 KKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKEYIVKFRFPEP-SQLQPPILGVHNVTFAFP 684
            .:.|..|..|..:.|           |.|     |:..|..|||:. .:..||||.:..:.|.:.
 Frog   456 VQSKLKLLEKLPELK-----------PVE-----KDTEVILRFPDGFEKFSPPILQLDEIGFWYS 504

  Fly   685 SQKPLFIKVDFGIDLTSRVAIVGPNGVGKSTFLKLLLGELEPQEGEQRKNHRLHVGRFDQHSGEH 749
            |.:|:|..:....||.||:.:||.||.||||.||||:|||.|.:|.:..:..|.:|.|.||..:.
 Frog   505 SDQPVFKNLSVSADLDSRICVVGENGAGKSTMLKLLMGELSPVQGIRNAHRNLKIGYFSQHHVDQ 569

  Fly   750 LTAEESAAEYLQRLFN-LPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARVALAELCLSAPDVL 813
            |....||.|.|.:.|: ...|:.|..|||:|:........:..||||||:|||.|::.:..|:..
 Frog   570 LDLNISAVELLAKRFSGKTEEEYRHQLGSYGISGELAVRPVASLSGGQKSRVAFAQMTMPCPNFY 634

  Fly   814 ILDEPTNNLDIESIDALAEAINEYEGGVIIVSHDERLIRETGCTLYVIEDQTINEIVGEFDDYR 877
            |||||||:||:|:|:||..|:|:::||||:||||||.||.....|:|.|:..:..|.|.||:||
 Frog   635 ILDEPTNHLDMETIEALGRALNKFKGGVILVSHDERFIRLVCQELWVCENGGVTRIEGGFDEYR 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1703NP_001285130.1 Uup 351..879 CDD:223562 225/540 (42%)
ABCF_EF-3 352..573 CDD:213188 107/222 (48%)
ABC_tran_Xtn 567..>611 CDD:289608 12/43 (28%)
ABCF_EF-3 676..865 CDD:213188 83/189 (44%)
abcf3NP_001120542.1 PLN03073 1..702 CDD:215558 264/779 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53504
OrthoDB 1 1.010 - - D249617at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.930

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