DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-4 and KOM

DIOPT Version :10

Sequence 1:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster
Sequence 2:NP_001321009.1 Gene:KOM / 844122 AraportID:AT1G77860 Length:385 Species:Arabidopsis thaliana


Alignment Length:232 Identity:50/232 - (21%)
Similarity:94/232 - (40%) Gaps:56/232 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 LFSIIEIIMFLVDVIHFQDDPNYQDRIGESTSGPAATL---FIY-----NPY------------- 227
            :|.:::|::|.|.:       ...|..|.|....:|.|   |.:     ||.             
plant    53 VFVLLQIVLFAVTM-------GVNDCSGNSHGHCSAKLLGRFSFQSLSENPMLGPSASTLEHMGG 110

  Fly   228 -------KRYEGWRFVSYMFVHVGIMHLMMNLIIQIFLGIALELVHHWWRVGLVYLAGVLAGSMG 285
                   :.:|.||.::..::|.|:.||.:||...||:||.:|......|:.::|....:.||:.
plant   111 LSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFLSGIMGSLF 175

  Fly   286 TSLTSPRIFLAGASGGVYALITAHIATIIMNYSEMEYAIVQL-LAFLVFCFTDLGTSVYRHLTDQ 349
            ..|....|....:....:.||.|.::.:..|::.....|..| :.|.:|....|           
plant   176 AVLFVRNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFTIFTVNFL----------- 229

  Fly   350 HDQIGYV------AHLSGAVAGLLVGIGVLRNLEVRR 380
               ||::      |::.|.::|.|:|..:|...::|:
plant   230 ---IGFLPFIDNFANIGGFISGFLLGFVLLFKPQLRQ 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-4NP_525084.1 FRQ1 <49..131 CDD:444056
Rhomboid 226..374 CDD:426384 37/174 (21%)
KOMNP_001321009.1 Rhomboid 119..256 CDD:426384 36/150 (24%)
Blue background indicates that the domain is not in the aligned region.

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