DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-4 and AT5G38510

DIOPT Version :10

Sequence 1:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster
Sequence 2:NP_198667.1 Gene:AT5G38510 / 833839 AraportID:AT5G38510 Length:434 Species:Arabidopsis thaliana


Alignment Length:407 Identity:78/407 - (19%)
Similarity:146/407 - (35%) Gaps:116/407 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 RPQTLRQDTIDME-EIPLNQTNSQEPEDRRKMHEIFDK--HDSDRDGLINTHELKELISDGYCRD 105
            :|.....|.||.: |:.:|       |:...:....||  .|:...||::: .|..:.|:|    
plant    96 KPSISTGDDIDRKAELNVN-------EELDSLSAYLDKLQKDAKSKGLVSS-TLDVVKSEG---- 148

  Fly   106 IPAYIADQILKRSDQDNDG---HLDFEE-------FYAMSLRHKWMVRNMLTRYCRYVVPPPKPL 160
              ..:|.::.|...::|:.   ..|.|:       |||:|:     :.::....|.:....|   
plant   149 --GSVASKLRKTGIENNNSPFQQFDDEDQAEDTLNFYAVSI-----LASINVGVCLFEAAAP--- 203

  Fly   161 EGDEPDGAYEKQMSICPPPLTMVLFSIIEIIMFLVDVIHFQDDPNYQDRIGESTSGPAATLFIYN 225
                   .....|.:...||.                        |..:|.:        |.:..
plant   204 -------VRNNNMGLLSLPLL------------------------YGAKIND--------LILAG 229

  Fly   226 PYKRYEGWRFVSYMFVHVGIMHLMMNLIIQIFLGIALELVHHWWRVGLVYLAGVLAGSMGTSL-- 288
                 |.||.|:.||:|.||.|:.::....:..|..:...:..:...|:|:.|.::|:..:.|  
plant   230 -----EWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYILGGVSGNFMSFLHT 289

  Fly   289 TSPRIFLAGASGGVYALITAHIATIIMNYSEM----EYAIVQLLAFLVFCFTDLGTSVYRHLTDQ 349
            ..|.:   |.:|..:|||.|.:.....| .||    ||..:...|.::   |..|. :..|....
plant   290 ADPTV---GGTGPAFALIGAWLVDQNQN-KEMIKSNEYEDLFQKAIIM---TGFGL-ILSHFGPI 346

  Fly   350 HDQIGYVAHLSGAVAGLLVGIGVLRNLEV-----RRWERILW--------------WVAVIVYFA 395
            .|.    .:|...:||::.|......|::     .|.|.|:.              ::...::.|
plant   347 DDW----TNLGALIAGIVYGFFTCPVLQLGSGGSERQEGIVTVGPEKQNSADPCKSFLLFTIFVA 407

  Fly   396 LMTTGIIIHVFVPDYFP 412
            ::.|.:::....|..||
plant   408 VIVTSLLLIGDGPLDFP 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-4NP_525084.1 FRQ1 <49..131 CDD:444056 19/94 (20%)
Rhomboid 226..374 CDD:426384 37/153 (24%)
AT5G38510NP_198667.1 Rhomboid 225..367 CDD:426384 38/158 (24%)

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