DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-4 and rhbdl2

DIOPT Version :10

Sequence 1:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster
Sequence 2:NP_001016521.1 Gene:rhbdl2 / 549275 XenbaseID:XB-GENE-992044 Length:290 Species:Xenopus tropicalis


Alignment Length:297 Identity:95/297 - (31%)
Similarity:155/297 - (52%) Gaps:31/297 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 EFYAMSLRHKWMVRNMLTRYCRYVVPPPKP-------------LEGDEPDGAYEKQMSICPPPLT 181
            |..||:.|..|.......:    ...|||.             |..::.| .|.::.:..|||:.
 Frog     2 ELEAMNSREDWPDETEEAK----TESPPKTCCDKIHETISNWILPTNQRD-TYLERANCLPPPIF 61

  Fly   182 MVLFSIIEIIMFLVDVIHFQDDPNYQDRIGESTSGPAATLFIYNPYKRYEGWRFVSYMFVHVGIM 246
            ::..||.|:.:|:...:...     |.:.....:|...:.|||.|.||.|.|||:|||.||.|:.
 Frog    62 IISVSIAELAVFIYYAVWMP-----QKQWITLDTGVWNSPFIYRPDKREEAWRFISYMMVHAGVQ 121

  Fly   247 HLMMNLIIQIFLGIALELVHHWWRVGLVYLAGVLAGSMGTSLTSPRIFLAGASGGVYALITAHIA 311
            |::.||.:|:.|||.|||||...|:||||||||:.||:.:|:....:.|.||||||||||..:..
 Frog   122 HIIGNLALQLLLGIPLELVHKGHRIGLVYLAGVIGGSLASSVFDSGLALVGASGGVYALIGGYFM 186

  Fly   312 TIIMNYSEM--EYAIVQLLAFLVFCFTDLGTSVYR----HLTDQHDQIGYVAHLSGAVAGLLVGI 370
            .:::|:.:|  .:.|.::|..:....||:|.::||    |.|.|  ::.:|||.:|.:||:.:|.
 Frog   187 NVLVNFKDMIPLFGIFRILVIITIVGTDVGFALYRRYISHETGQ--KVSFVAHFAGGLAGMSIGY 249

  Fly   371 GVLRNLEVRRWERILWWVAVIVYFALMTTGIIIHVFV 407
            .|....:....:...:|:.:..|.|.:...::.::|:
 Frog   250 TVFSCFDKNLIKDPRFWICIAAYAAFVIFAVLFNIFL 286

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity