DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-4 and ru

DIOPT Version :10

Sequence 1:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster
Sequence 2:NP_524790.1 Gene:ru / 44856 FlyBaseID:FBgn0003295 Length:341 Species:Drosophila melanogaster


Alignment Length:390 Identity:110/390 - (28%)
Similarity:179/390 - (45%) Gaps:103/390 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 PAERRSPPSRPQTLRQDTIDMEEIPLNQTNSQEPEDRRKMHEIFDKHDSDRDGLINTHELKELIS 99
            |::.|.|.:||..   .|::..|:|.:......|...           |.:.||:.         
  Fly     8 PSQGRRPKNRPLI---GTVEEGEMPPSTVLQMPPAPL-----------SSKSGLVL--------- 49

  Fly   100 DGYCRDIPAYIADQILKRSDQDNDGHLDFEEFYAMSLRHKWMVRNMLTRYCRYVVPPPKPLEG-- 162
             |.|       .||::                                     .|.|.:...|  
  Fly    50 -GVC-------CDQLM-------------------------------------AVQPVQRASGAA 69

  Fly   163 ----DEPD----GAYEKQMSICP----PPLTMVLFSIIEIIMFLVDVIHFQDDPNYQDRIGESTS 215
                :.||    .|...:.|..|    ||..::|.:::|:::||    ....||           
  Fly    70 ATKSNSPDWGNHRAKHHEGSAAPFKWIPPFFIILATLLEVLVFL----WVGADP----------- 119

  Fly   216 GPAATLFIYNPYKRYEGWRFVSYMFVHVGIMHLMMNLIIQIFLGIALELVHHWWRVGLVYLAGVL 280
             |..:|.:|.|.:|.:.|||:||..:|...:||..|::.|:..|:.|||||...|.|::|:||||
  Fly   120 -PEDSLLVYRPDQRLQLWRFLSYALLHASWLHLGYNVLTQLLFGVPLELVHGSLRTGVIYMAGVL 183

  Fly   281 AGSMGTSLTSPRIFLAGASGGVYALITAHIATIIMNYSEMEYAIVQLLAFLVFCFTDLGTSVY-- 343
            |||:|||:....:||.|||||||||:.|.:|::::|:.:|.:.::||:|.::|.|.|||.::|  
  Fly   184 AGSLGTSVVDSEVFLVGASGGVYALLAAQLASLLLNFGQMRHGVIQLMAVILFVFCDLGYALYSR 248

  Fly   344 ---RHLTDQHDQIGYVAHLSGAVAGLLVGIGVLRNLEVRRWERILWWVAVIVYFALMTTGIIIHV 405
               .|.......:.|:||::||:||:.||:.:||.|:.....|.|.|:|:.|:......||..::
  Fly   249 ELAMHQLQTRPSVSYIAHMTGALAGISVGLLLLRQLDGGLRPRPLRWLALGVWCIFSAFGIAFNL 313

  Fly   406  405
              Fly   314  313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-4NP_525084.1 FRQ1 <49..131 CDD:444056 11/81 (14%)
Rhomboid 226..374 CDD:426384 65/152 (43%)
ruNP_524790.1 Rhomboid 129..283 CDD:426384 66/153 (43%)

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