DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-4 and Rhbdf1

DIOPT Version :10

Sequence 1:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster
Sequence 2:XP_038941805.1 Gene:Rhbdf1 / 303008 RGDID:1305075 Length:907 Species:Rattus norvegicus


Alignment Length:266 Identity:49/266 - (18%)
Similarity:104/266 - (39%) Gaps:58/266 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 YCRYVVPPPKPLEGDEPDGAYEKQMSICPPPLTMVLFSIIEIIMFLVDVIHFQDDPNYQDRIGES 213
            ||.::            .|.:.::.::|                   ..:|..||          
  Rat   666 YCDFM------------KGYFHEEATLC-------------------SQVHCMDD---------- 689

  Fly   214 TSGPAATLFIYNPYKRYEGWRFVSYMFVHVGIMHLMMNLIIQIFLGIALELVHHWWRVGLVYLAG 278
               ....|...||....:.:|....:|:|.||:|.::::..|:.:...||.:..|.|:.::||..
  Rat   690 ---VCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLS 751

  Fly   279 VLAGSMGTSLTSPRIFLAGASGGVYALITAHIATIIMNYSEME---YAIVQLLAFLVFCFTDLGT 340
            .:.|::.:::..|.....|.:|..:.::......:..::..:.   .|..:|||.::|.|. .|.
  Rat   752 GVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFA-FGL 815

  Fly   341 SVYRHLTDQHDQIGYVAHLSGAVAGLLVGIGVLRNLEVRRWERILWWVAVIVYFALMTTGIIIHV 405
            ..:         |...||:||.|:||.:....|..:...:::.......:|::.|:. .|::..:
  Rat   816 LPW---------IDNFAHISGFVSGLFLSFAFLPYISFGKFDLYRKRCQIIIFQAVF-LGLLAGL 870

  Fly   406 FVPDYF 411
            .|..||
  Rat   871 VVLFYF 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-4NP_525084.1 FRQ1 <49..131 CDD:444056
Rhomboid 226..374 CDD:426384 33/150 (22%)
Rhbdf1XP_038941805.1 Rhomboid_SP 142..336 CDD:463639
Rhomboid 699..842 CDD:426384 34/152 (22%)
Blue background indicates that the domain is not in the aligned region.

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