DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-4 and rom-5

DIOPT Version :9

Sequence 1:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster
Sequence 2:NP_001379293.1 Gene:rom-5 / 190260 WormBaseID:WBGene00004404 Length:333 Species:Caenorhabditis elegans


Alignment Length:354 Identity:76/354 - (21%)
Similarity:127/354 - (35%) Gaps:98/354 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 RDGL---INTHELKELISDGYCRDIPAYIADQILKRSDQDNDGHLDF------EEFYAMSLRHKW 140
            ||||   :...|||||..:...:.  |:..|....|...|....|.|      ..|....:...|
 Worm    27 RDGLRDRLRQQELKELTKNHQIKQ--AFSPDARTVRPMSDLWKALQFTLATGVTTFSIAIVADSW 89

  Fly   141 MVR--------NMLTRYCRYVVPPPKP-LEGDEPDGAYEKQMSICPPPLTMVLFSIIEIIMFLVD 196
            ..|        |:......|..|..:. :|....:|  ||.:::      ::..:::..:|:.  
 Worm    90 NRRKEERTAPINVFDAVKYYFEPKVEAGIEYKLTNG--EKHLAL------LIGLNVVVYLMWK-- 144

  Fly   197 VIHFQDDPNYQDRIGESTSGPAATLFIYNPYKRYEGWRFVSYM----FVHVGIMHLMMNL----- 252
                          |:|.: |..|.:..|.|....   ..|.|    |.|..|:||.:|:     
 Worm   145 --------------GKSLN-PFMTRYFTNSYASKS---LCSPMLLSAFSHSSIIHLGLNMYVLST 191

  Fly   253 ----IIQIFLGIALELVHHWWRVGLVYLAGVLAGS----MGTSLTSPRIFLAGASGGVYALITAH 309
                ||:.|:|     |..:|.   .|:...:..|    :..::....|...||||.:.|.:|..
 Worm   192 FAPHIIEKFMG-----VEQFWS---FYVTAAVVSSFVSIVDKAVVRSPIRALGASGAILAALTYT 248

  Fly   310 IATI---------IMNYS-EMEYAIVQLLAFLVFCFTDLGTSVYRHLTDQHDQIGYVAHLSGAVA 364
            ...|         |.|:. ..:.|:..::||.:     ||..:...|.|      :.|||.|:  
 Worm   249 CMQIPDGRLSLVFIPNFDFSAQNAVYGIIAFDL-----LGLLLRFRLFD------HAAHLGGS-- 300

  Fly   365 GLLVGIGVLRNLEVRRWERILWWVAVIVY 393
              |.|:|....|:...||:...|:..:::
 Worm   301 --LFGVGYALFLQDALWEKYGEWLENLLF 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-4NP_525084.1 EFh_HEF <57..197 CDD:355006 26/129 (20%)
EFh 73..134 CDD:238008 16/57 (28%)
Rhomboid 226..374 CDD:396315 41/174 (24%)
rom-5NP_001379293.1 Rhomboid 169..310 CDD:419717 39/163 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0705
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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