DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-4 and rom-2

DIOPT Version :9

Sequence 1:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster
Sequence 2:NP_001366679.1 Gene:rom-2 / 183564 WormBaseID:WBGene00004401 Length:348 Species:Caenorhabditis elegans


Alignment Length:353 Identity:106/353 - (30%)
Similarity:171/353 - (48%) Gaps:29/353 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 EEIPLNQTNSQEPEDRRKMHEIFDKHDSDRDGLINTHELKELISDG-YCRDIPAYIADQILKRSD 119
            |..|:|...:.      ....||...|:|.||||...|:::.|.|. |......|...::....:
 Worm     7 ESAPVNDIEAS------SWIRIFRAFDTDHDGLIQCEEMQKTIRDSTYSFGFDHYELQKMSLYLE 65

  Fly   120 QDNDGHLDFEEF-YAMSLRHKWMVRNMLTRYCRYVVPPPKPLEGDEPDGAYEKQMSIC-PPPLTM 182
            ......:||.:| |.||....:.:|..|.|....|.|..:.:....     |.|...| |||:.:
 Worm    66 MREGKPVDFADFCYLMSKCKGYRLREYLFRAALTVTPKNQRIHVFS-----ELQRYKCVPPPIFL 125

  Fly   183 VLFSIIEIIMFLVDVIHFQDDPNYQDRIGESTSGPAATL--FIYNPYKRYEGWRFVSYMFVHVGI 245
            :..||:::..:|..|:...:        |...|||..|:  .|.:.|...|.||..:|..::|||
 Worm   126 IFLSIVQLAFYLYYVVDSSE--------GVWLSGPIPTMSPLIVSQYHLPELWRLFTYCLINVGI 182

  Fly   246 MHLMMNLIIQIFLGIALELVHHWWRVGLVYLAGVLAGSMGTSLTSPRIFLAGASGGVYALITAHI 310
            .|::.|::||:.:|:.|||||. ||:.::|..|||.||:.:....|.:||.|.:.|.::||.:||
 Worm   183 FHIIFNILIQLAIGVPLELVHR-WRIYILYFMGVLFGSILSLALDPTVFLCGGAAGSFSLIASHI 246

  Fly   311 ATIIMNYSEMEYAIVQLLAFLVFCFTDLGTSVY-RHLTDQHDQIGYVAHLSGAVAGLLVGIGVLR 374
            .||..|:.|||.|..:|...:||...|...:|| |....:.|::....||.|.|||:|....:.|
 Worm   247 TTIATNFKEMENATCRLPILIVFAALDYVLAVYQRFFAPRIDKVSMYGHLGGLVAGILFTFILFR 311

  Fly   375 NLEVRRWERILWWVAVIV---YFALMTT 399
            ..:..|:..:.:||::::   :.|:..|
 Worm   312 GSKPSRFYTVSFWVSLVLSGFFIAICIT 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-4NP_525084.1 EFh_HEF <57..197 CDD:355006 35/142 (25%)
EFh 73..134 CDD:238008 17/62 (27%)
Rhomboid 226..374 CDD:396315 57/148 (39%)
rom-2NP_001366679.1 EF-hand_7 21..82 CDD:404394 17/60 (28%)
Rhomboid 165..311 CDD:396315 56/146 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0705
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H122345
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1253228at2759
OrthoFinder 1 1.000 - - FOG0000995
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_107191
Panther 1 1.100 - - O PTHR45840
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.780

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