DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-4 and LOC1269249

DIOPT Version :10

Sequence 1:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster
Sequence 2:XP_307868.5 Gene:LOC1269249 / 1269249 VectorBaseID:AGAMI1_000914 Length:384 Species:Anopheles gambiae


Alignment Length:244 Identity:81/244 - (33%)
Similarity:134/244 - (54%) Gaps:31/244 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 QMSICPP---PLTMVLFSIIEIIMFLVDVIHFQDDPNYQDRIGESTSGPAATLFIYNPYKRYEGW 233
            |:..|.|   |.::::.|.::|..|...          .|.|.:.        .|::|.|:||.|
Mosquito   150 QLCQCCPWTVPWSLLIVSALQITAFTYS----------NDAINQK--------LIFSPVKQYEVW 196

  Fly   234 RFVSYMFVHVGIMHLMMNLIIQIFLGIALELVHHWWRVGLVYLAGVLAGSMGTSLTSPRIFLAGA 298
            |||:|.|:|.|.:||::|:|||:.:...||......:|.|||.||::||.:|.|:..|.: :.||
Mosquito   197 RFVTYTFLHAGSVHLVLNIIIQLLVAFPLETEQGHGKVLLVYFAGIVAGGLGASVFEPSL-MVGA 260

  Fly   299 SGGVYALITAHIATIIMNYSEMEYAIVQLLAFLVFCFTDLGTSVYRHLT--DQHDQIGYVAHLSG 361
            |.|||.|:.:||..|:||:..:.|...:|:|.|:.|.:|:..|:...||  :...:||..||:||
Mosquito   261 SAGVYCLLMSHIPHIMMNFRTLSYRYYRLIAVLMLCISDVLYSIRHCLTKGNLQPRIGVAAHISG 325

  Fly   362 AVAGLLVGIGVLR-NLEVRRWE-----RILWWVAVIVYFALMTTGIIIH 404
            |:.|||:|..:.| .:|....:     |.|.::||::..|.: .|.:::
Mosquito   326 ALCGLLIGFVIYRPKVEPEASKAVVMFRSLRYLAVVLLLAWL-VGTVLY 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-4NP_525084.1 FRQ1 <49..131 CDD:444056
Rhomboid 226..374 CDD:426384 63/149 (42%)
LOC1269249XP_307868.5 None
Blue background indicates that the domain is not in the aligned region.

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