DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-4 and Rhbdl1

DIOPT Version :10

Sequence 1:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster
Sequence 2:XP_008765759.1 Gene:Rhbdl1 / 117025 RGDID:620699 Length:433 Species:Rattus norvegicus


Alignment Length:449 Identity:127/449 - (28%)
Similarity:200/449 - (44%) Gaps:104/449 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 AQQLQLQQQRDVENGLYPTIPAERRSPPSRP---------QTLRQDTIDME-------------- 56
            |:|.:...:...|......:||. ..|..||         |.:::..:|.|              
  Rat    25 AEQTERAGRGGAERSAEQPLPAS-ADPGPRPGSMDRSSLLQLIQEQQLDPENTGFIGADTFAGLV 88

  Fly    57 ---EIPLNQTNSQEPEDRRKMHEIFDKHDSDRDGLINTHELKELISDGYCRDIPAYIADQILKRS 118
               |:||:.|         |:..:.....|:..|.:...||.:|:|        |.|:.   |||
  Rat    89 HSHELPLDPT---------KLDMLVALAQSNERGQVCYQELVDLVS--------AMISS---KRS 133

  Fly   119 DQ------------DNDGHLDFEEFYAMSLRHKWMVRNMLTRYCRYVVPPPKPLEGDEPDGAYEK 171
            ..            ..||.||....            .:..|:.|||.....|.|.|.....|..
  Rat   134 SSFKRAIANGQRALPRDGLLDEPGL------------GIYKRFVRYVAYEILPCEVDRRWYFYRH 186

  Fly   172 QMSICPPPLTMVLFSIIEIIMFL----------VDVIHFQDDPNYQDRIGESTSGPAATLFIYNP 226
            :  .||||:.|...::.:||:||          :...|    |.|.       ..|    .:|:|
  Rat   187 R--TCPPPVFMASVTLAQIIVFLCYGARLNKWVLQTYH----PEYM-------KSP----LVYHP 234

  Fly   227 YKRYEGWRFVSYMFVHVGIMHLMMNLIIQIFLGIALELVHHWWRVGLVYLAGVLAGSMGTSLTSP 291
            ..|...|||::|||:|||:..|..|.::|:.:|:.||:||...|:.|:|||||||||:..|:|..
  Rat   235 GHRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSLTVSITDM 299

  Fly   292 RIFLAGASGGVYALITAHIATIIMNYSEME--YAIVQLLAFLVFCFTDLGTSVYRH----LTDQH 350
            |..:.|.|||||||.:||:|.::||::.|.  |.:::::..||...:::|.:|:..    |....
  Rat   300 RAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMSSEVGRAVWLRFSPPLPASG 364

  Fly   351 DQIGYVAHLSGAVAGLLVGIGVLRNLEVRRWERILWWVAVIVYFALMTTGIIIHVFVPD 409
            .|..::|||:|||.|:.:|:.:||:.|.|..::..|||.::.|...:...|..:||..|
  Rat   365 PQPSFMAHLAGAVVGVSMGLTILRSYEERLRDQCGWWVVLLAYGTFLLFAIFWNVFAYD 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-4NP_525084.1 FRQ1 <49..131 CDD:444056 22/110 (20%)
Rhomboid 226..374 CDD:426384 62/153 (41%)
Rhbdl1XP_008765759.1 Rhomboid 234..388 CDD:426384 62/153 (41%)

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