DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-4 and rhbdf1

DIOPT Version :10

Sequence 1:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster
Sequence 2:XP_004917997.1 Gene:rhbdf1 / 100494777 XenbaseID:XB-GENE-6083739 Length:892 Species:Xenopus tropicalis


Alignment Length:413 Identity:71/413 - (17%)
Similarity:148/413 - (35%) Gaps:119/413 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LRQDTIDMEEIPLNQTNSQEPEDRRKMHEIFDKHDSDRDGLINTHE------------------L 94
            :|||....:.|.:|:       |:.|......:  :|:.|.|.|.|                  .
 Frog   515 MRQDQDVYKFIKINR-------DKEKNSACCVR--NDKSGCIQTSEEECSSTLAVWVKWPTHSST 570

  Fly    95 KELI------SDGYCRDIPAYIA-----------DQILK--RSDQDNDGHLDFEEFYAMS----- 135
            .||.      |...|...|.:.|           |.|.|  ...:::|||  |.....|.     
 Frog   571 PELANKSARHSGSVCHQDPRFCAEPASVTPHEWPDDITKWPVCTKNSDGH--FPNHLHMDCVITG 633

  Fly   136 ----LRHKWMVRNMLTRYCRYVVPPPKPLEGDEPDGAYEKQMSICPPPLTMVLFSIIEIIMFLVD 196
                :..|.........||.::            .|.:.::.::|..  ...:..:..::.||  
 Frog   634 RPCCIGTKGRCEITSREYCDFM------------KGYFHEEATLCSQ--VHCMDDVCGLLPFL-- 682

  Fly   197 VIHFQDDPNYQDRIGESTSGPAATLFIYNPYKRYEGWRFVSYMFVHVGIMHLMMNLIIQIFLGIA 261
                  ||.:.|::                   |..|   ..:|:|.|::|.::::..|:.:...
 Frog   683 ------DPEFPDQV-------------------YRLW---LSLFLHAGVLHCLVSVCFQMTILRD 719

  Fly   262 LELVHHWWRVGLVYLAGVLAGSMGTSLTSPRIFLAGASGGVYALITAHIATIIMNYSEME---YA 323
            ||.:..|.|:.::|:...:.|::.:::..|.....|.:|..:.::......:..::..:.   .|
 Frog   720 LEKLAGWHRISIIYILSGITGNLTSAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRA 784

  Fly   324 IVQLLAFLVFCFTDLGTSVYRHLTDQHDQIGYVAHLSGAVAGLLVGIGVLRNLEVRRWE----RI 384
            ..:|.|.::|.|| .|...:         |...||.:|.|:|..:....|..:...:::    |.
 Frog   785 FFKLFAVVIFLFT-FGLLPW---------IDNFAHFAGFVSGFFLSFAFLPYISFGKFDMYRKRC 839

  Fly   385 LWWVAVIVYFALMTTGIIIHVFV 407
            ...:.::::|.|. :|:::..:|
 Frog   840 QIIIFLLIFFGLF-SGLVVLFYV 861

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-4NP_525084.1 FRQ1 <49..131 CDD:444056 25/118 (21%)
Rhomboid 226..374 CDD:426384 29/150 (19%)
rhbdf1XP_004917997.1 Rhomboid_SP 127..320 CDD:463639
Rhomboid 684..827 CDD:426384 32/174 (18%)
Blue background indicates that the domain is not in the aligned region.

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