DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-4 and rhbdf2

DIOPT Version :10

Sequence 1:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster
Sequence 2:NP_001090673.1 Gene:rhbdf2 / 100036646 XenbaseID:XB-GENE-966769 Length:826 Species:Xenopus tropicalis


Alignment Length:379 Identity:68/379 - (17%)
Similarity:142/379 - (37%) Gaps:111/379 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 SDRDGLINTHE--------------------LKEL-----ISDGYCR------DIPAYI-----A 111
            :|:.|.:.||.                    |.|:     .|...|.      :.||.|     |
 Frog   474 NDKSGCVQTHRKDCSETLATFIKWPEHDAPVLDEVTGMKRTSGAVCHQDPRTCEEPASIQPHVWA 538

  Fly   112 DQILK------RSDQDNDG--HLDFE-EFYAMSLRHKWMVRNMLTRYCRYVVPPPKPLEGDEPDG 167
            |.|.|      ::..::.|  |:|.| :.....:..|.........||.::            .|
 Frog   539 DDITKWPICTYQAMNNHTGIRHMDCEIKGRPCCIGTKGSCEITTREYCTFM------------HG 591

  Fly   168 AYEKQMSICPPPLTMVLFSIIEIIMFLVDVIHFQDDPNYQDRIGESTSGPAATLFIYNPYKRYEG 232
            .:.::.::|..  ...|..:..::.||        :|.|.|:.                   |..
 Frog   592 YFHEEATLCSQ--VHCLDEVCGLLPFL--------NPEYPDQF-------------------YRL 627

  Fly   233 WRFVSYMFVHVGIMHLMMNLIIQIFLGIALELVHHWWRVGLVYLAGVLAGSMGTSLTSPRIFLAG 297
            |   ..:|:|.|::|..::::.|:.:...||.:..|.|:.::|:...:.|::.::|..|.....|
 Frog   628 W---LSLFLHAGVIHCCVSVVFQMTVLRDLEKLAGWLRISIIYILSGITGNLASALFLPYRAEVG 689

  Fly   298 ASGGVYALITAHIATIIMNYSEME---YAIVQLLAFLVFCFTDLGTSVYRHLTDQHDQIGYVAHL 359
            .:|..:.|:......:..::..:.   .|.::||..::|.|          |......|..:||:
 Frog   690 PAGSQFGLLACLFVELFQSWQILAKPWKAFLKLLGIVLFLF----------LFGLLPWIDNIAHI 744

  Fly   360 SGAVAGLLVGIGVLRNL------EVRRWERILWWVAVIVYFALMTTGIIIHVFV 407
            .|.::|||:....|..:      :.|:...|:  ::::|:..|..: ::|.::|
 Frog   745 FGFLSGLLLSFSFLPYITFGTADKFRKRAMII--ISLLVFVGLFAS-LVIWLYV 795

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-4NP_525084.1 FRQ1 <49..131 CDD:444056 19/92 (21%)
Rhomboid 226..374 CDD:426384 31/150 (21%)
rhbdf2NP_001090673.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..38
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 51..78
Rhomboid_SP 90..280 CDD:463639
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 153..180
Rhomboid 618..761 CDD:426384 35/174 (20%)
MFS 746..>803 CDD:475125 11/53 (21%)
Blue background indicates that the domain is not in the aligned region.

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