DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pkm and LOC1273909

DIOPT Version :10

Sequence 1:NP_996412.1 Gene:pkm / 32108 FlyBaseID:FBgn0030317 Length:635 Species:Drosophila melanogaster
Sequence 2:XP_312943.4 Gene:LOC1273909 / 1273909 VectorBaseID:AGAMI1_003582 Length:441 Species:Anopheles gambiae


Alignment Length:409 Identity:87/409 - (21%)
Similarity:158/409 - (38%) Gaps:81/409 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 EDLPNEQVTQFLRQLVSQLWPELGANPELRLERASAKG--DNYLGVVWRLQAASDSK-------R 276
            :|.....:|:.|.:.:....|||....::...:.|...  |.::..:.:|....:|.       .
Mosquito     3 KDRKTSFLTEELPRKILHYCPELDGEGKISDVQLSTPDHLDGFMSTIHKLSFRYESNDGTVVQTL 67

  Fly   277 SLVVKLPPQNRVRRKQFFARPCFLRETAAYEVFLP-LTALIQDKWKIIGD---DRFRQHALCFGT 337
            .|:||:...:...|:....:..|..|...|...|| ...|:.|. .:.||   ..:...|..|.|
Mosquito    68 KLMVKVMKGSDEFRESSMGKTQFTNEIYIYTKVLPAFQELLTDS-GLAGDWCPRVYYGEAGHFPT 131

  Fly   338 RQDEPNECIVLEDLSCAGFSLHNRFLDLSVEHVRRVMLTYAKLHAISLAGKRQLPEKM------- 395
            ..|:....:||||:|..|:....| |||..||:|.:....|..||.:.|.:.:...::       
Mosquito   132 YSDQYETILVLEDISPLGYKAGPR-LDLEEEHLRLMARHIASFHACTYAMRLRNDARLASLIEGI 195

  Fly   396 -----------------------QQLQQLVDIFEQRRDDHALGVYFENLKESALSALLAPADDAY 437
                                   .:|.:.:|...::.|..|......||::...:..::...|..
Mosquito   196 APLDFVSGDKTFTSYDVLLKLGANRLYKYLDDHPEQLDSEAFKRDMNNLRQRYGTTPISLMQDLL 260

  Fly   438 RVRLEAYFARGSYFELLLPLVSGFNCEPFAVICHGDCWNNNILYKSTERGELEDVRLIDWQLMRY 502
            |                       ..|.|:||.|||...||:|:::...|:..::::.|:|..||
Mosquito   261 R-----------------------KDETFSVILHGDYNRNNVLFRADGAGKPVELKMFDFQENRY 302

  Fly   503 ASPVTDLAYFLFTCTSRRFRQRHLENMLEDYYEELGLQLIRLGERVEQ---------LFPRPAFD 558
            |:||.||.::::...:...|.|..:.::.:|:..| |:.:....:|.|         |.|   |.
Mosquito   303 ATPVIDLTFYMYMSMTEELRNRCWDAIVLEYHTAL-LESLATILKVPQEDGLLDPYRLEP---FL 363

  Fly   559 EQVATKAAVGLLLAMMVLP 577
            |.....|..|:::.:..||
Mosquito   364 EHFKRHAMYGVIVTLHFLP 382

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity