DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nod and MRH2

DIOPT Version :9

Sequence 1:NP_001285129.1 Gene:nod / 32107 FlyBaseID:FBgn0002948 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_001326426.1 Gene:MRH2 / 824652 AraportID:AT3G54870 Length:1051 Species:Arabidopsis thaliana


Alignment Length:683 Identity:165/683 - (24%)
Similarity:262/683 - (38%) Gaps:193/683 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVD------------------------QNEFH 49
            ||::||..|                  .:|:.||.|                        ...:.
plant   105 VRVSVRVRP------------------RNGEELISDADFADLVELQPEIKRLKLRKNNWNSESYK 151

  Fly    50 FDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILP 114
            ||..|..|.||..:|:.:..|:|:.:|.|:..|.:|||||||||:|::|..  |:......||:.
plant   152 FDEVFTDTASQKRVYEGVAKPVVEGVLSGYNGTIMAYGQTGTGKTYTVGKI--GKDDAAERGIMV 214

  Fly   115 RALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG-----------------STPHMPMV 162
            |||.||....::.      :|.|..|::::|.|...|||.                 |.|...:|
plant   215 RALEDILLNASSA------SISVEISYLQLYMETIQDLLAPEKNNISINEDAKTGEVSVPGATVV 273

  Fly   163 AARCQRCTCLPLHSQADLHH---ILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK---------- 214
            ..:             ||.|   :|::|..||....|.||:.|||||||:|::|:          
plant   274 NIQ-------------DLDHFLQVLQVGETNRHAANTKMNTESSRSHAILTVYVRRAMNEKTEKA 325

  Fly   215 ----------SKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV 269
                      .:...|::.||||||||.:.::|.:|...:|...|||.|.|:.|.:.::|.|.:.
plant   326 KPESLGDKAIPRVRKSKLLIVDLAGSERINKSGTDGHMIEEAKFINLSLTSLGKCINALAEGSSH 390

  Fly   270 IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLRLNPMQVARQ---- 330
            ||.|||.||.:|:.|....:..:.:..|.|.....:||.||:.||..|.|: :|.:::..:    
plant   391 IPTRDSKLTRLLRDSFGGSARTSLIITIGPSARYHAETTSTIMFGQRAMKI-VNMVKLKEEFDYE 454

  Fly   331 --KQSLAARTTHVFRQALCTSTAIKSNAANHNSIVVPKSKYSTTKPLSAVLHRTRSELGMTPKAK 393
              .:.|..:..|:      |:...:.|          |.:.|....|...|....:......|..
plant   455 SLCRKLETQVDHL------TAEVERQN----------KLRNSEKHELEKRLRECENSFAEAEKNA 503

  Fly   394 KRARELLELEETTLELS------SIHIQDSSLSLLGFHSDSDKDRHLMPPPTGQEPRQASSQNST 452
            ....:.||.|.|.||||      .:.:|.....|:     .||...|       |.:..:::...
plant   504 VTRSKFLEKENTRLELSMKELLKDLQLQKDQCDLM-----HDKAIQL-------EMKLKNTKQQQ 556

  Fly   453 LMGIVEETEPKESSKVQQSMVAPTV---------PTTVRCQLFNTTISPISLRASSS-------- 500
            |.....|.:..::|:|.:..:|..|         .|....||  |.:..|..:...|        
plant   557 LENSAYEAKLADTSQVYEKKIAELVQRVEDEQARSTNAEHQL--TEMKNILSKQQKSIHEQEKGN 619

  Fly   501 ---QRELSGIQPMEETVVASPQQPCLRRSVRLASSMRSQNYGAIPKVMNLRRSTRLAGIREHATS 562
               ||||:......|:.:|           .|...:..:|..:......||:..||...|:    
plant   620 YQYQRELAETTHTYESKIA-----------ELQKKLEGENARSNAAEDQLRQMKRLISDRQ---- 669

  Fly   563 VVVKNETDAIPHLR-----------STVQKKRT 584
             |:..|.:....|:           |||.:.:|
plant   670 -VISQENEEANELKIKLEELSQMYESTVDELQT 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nodNP_001285129.1 KISc 8..325 CDD:214526 110/379 (29%)
KISc 8..318 CDD:276812 107/372 (29%)
ComEA 540..648 CDD:224472 12/56 (21%)
MRH2NP_001326426.1 KISc 121..439 CDD:276812 99/338 (29%)
Smc 472..>757 CDD:224117 52/270 (19%)
COG4372 647..>869 CDD:226809 13/60 (22%)
armadillo repeat 804..829 CDD:293788
armadillo repeat 836..873 CDD:293788
armadillo repeat 878..913 CDD:293788
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000448
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.870

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