DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nod and MRH2

DIOPT Version :10

Sequence 1:NP_511125.2 Gene:nod / 32107 FlyBaseID:FBgn0002948 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_001326426.1 Gene:MRH2 / 824652 AraportID:AT3G54870 Length:1051 Species:Arabidopsis thaliana


Alignment Length:683 Identity:165/683 - (24%)
Similarity:262/683 - (38%) Gaps:193/683 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVD------------------------QNEFH 49
            ||::||..|                  .:|:.||.|                        ...:.
plant   105 VRVSVRVRP------------------RNGEELISDADFADLVELQPEIKRLKLRKNNWNSESYK 151

  Fly    50 FDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILP 114
            ||..|..|.||..:|:.:..|:|:.:|.|:..|.:|||||||||:|::|..  |:......||:.
plant   152 FDEVFTDTASQKRVYEGVAKPVVEGVLSGYNGTIMAYGQTGTGKTYTVGKI--GKDDAAERGIMV 214

  Fly   115 RALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG-----------------STPHMPMV 162
            |||.||....::.      :|.|..|::::|.|...|||.                 |.|...:|
plant   215 RALEDILLNASSA------SISVEISYLQLYMETIQDLLAPEKNNISINEDAKTGEVSVPGATVV 273

  Fly   163 AARCQRCTCLPLHSQADLHH---ILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK---------- 214
            ..:             ||.|   :|::|..||....|.||:.|||||||:|::|:          
plant   274 NIQ-------------DLDHFLQVLQVGETNRHAANTKMNTESSRSHAILTVYVRRAMNEKTEKA 325

  Fly   215 ----------SKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV 269
                      .:...|::.||||||||.:.::|.:|...:|...|||.|.|:.|.:.::|.|.:.
plant   326 KPESLGDKAIPRVRKSKLLIVDLAGSERINKSGTDGHMIEEAKFINLSLTSLGKCINALAEGSSH 390

  Fly   270 IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLRLNPMQVARQ---- 330
            ||.|||.||.:|:.|....:..:.:..|.|.....:||.||:.||..|.|: :|.:::..:    
plant   391 IPTRDSKLTRLLRDSFGGSARTSLIITIGPSARYHAETTSTIMFGQRAMKI-VNMVKLKEEFDYE 454

  Fly   331 --KQSLAARTTHVFRQALCTSTAIKSNAANHNSIVVPKSKYSTTKPLSAVLHRTRSELGMTPKAK 393
              .:.|..:..|:      |:...:.|          |.:.|....|...|....:......|..
plant   455 SLCRKLETQVDHL------TAEVERQN----------KLRNSEKHELEKRLRECENSFAEAEKNA 503

  Fly   394 KRARELLELEETTLELS------SIHIQDSSLSLLGFHSDSDKDRHLMPPPTGQEPRQASSQNST 452
            ....:.||.|.|.||||      .:.:|.....|:     .||...|       |.:..:::...
plant   504 VTRSKFLEKENTRLELSMKELLKDLQLQKDQCDLM-----HDKAIQL-------EMKLKNTKQQQ 556

  Fly   453 LMGIVEETEPKESSKVQQSMVAPTV---------PTTVRCQLFNTTISPISLRASSS-------- 500
            |.....|.:..::|:|.:..:|..|         .|....||  |.:..|..:...|        
plant   557 LENSAYEAKLADTSQVYEKKIAELVQRVEDEQARSTNAEHQL--TEMKNILSKQQKSIHEQEKGN 619

  Fly   501 ---QRELSGIQPMEETVVASPQQPCLRRSVRLASSMRSQNYGAIPKVMNLRRSTRLAGIREHATS 562
               ||||:......|:.:|           .|...:..:|..:......||:..||...|:    
plant   620 YQYQRELAETTHTYESKIA-----------ELQKKLEGENARSNAAEDQLRQMKRLISDRQ---- 669

  Fly   563 VVVKNETDAIPHLR-----------STVQKKRT 584
             |:..|.:....|:           |||.:.:|
plant   670 -VISQENEEANELKIKLEELSQMYESTVDELQT 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nodNP_511125.2 KISc 8..318 CDD:276812 107/372 (29%)
ComEA 606..>645 CDD:441164
MRH2NP_001326426.1 KISc 121..439 CDD:276812 99/338 (29%)
Smc <476..>757 CDD:440809 51/256 (20%)
SRP1 718..>914 CDD:227396
armadillo repeat 804..829 CDD:293788
armadillo repeat 836..873 CDD:293788
Arm 839..873 CDD:425727
armadillo repeat 878..913 CDD:293788
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.