DRSC/TRiP Functional Genomics Resources

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Protein Alignment nod and kif1c

DIOPT Version :10

Sequence 1:NP_511125.2 Gene:nod / 32107 FlyBaseID:FBgn0002948 Length:666 Species:Drosophila melanogaster
Sequence 2:XP_031755447.1 Gene:kif1c / 779557 XenbaseID:XB-GENE-997155 Length:1105 Species:Xenopus tropicalis


Alignment Length:478 Identity:140/478 - (29%)
Similarity:218/478 - (45%) Gaps:92/478 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEGAKLSAVRIAVREAPYR-QFLGRREPSVVQFPPWSDGKSLIVDQ--------NEFHFDHAF-- 54
            |.||   :|::|||..|:. :.:......|:|.    .|.:..:..        ..|.||:::  
 Frog     1 MAGA---SVKVAVRVRPFNSREIAHDAKCVIQM----QGNTTCISNPKQPKDSAKNFTFDYSYWS 58

  Fly    55 ------PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGIL 113
                  |...||.::|:.:...::....||:.....||||||:||||:|...|..|   :| ||:
 Frog    59 HTTAEDPNFASQCQVYKDIGEEMLLHAFEGYNVCIFAYGQTGSGKSYTMMGKPESE---QH-GII 119

  Fly   114 PRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG-------STPHMPMVAARCQRCTC 171
            |:...|:|.||:|.:..:. :..|..|::|||.|:..|||.       .....|::....:..:.
 Frog   120 PQLCEDLFARVSANRSPDL-SCSVEVSYMEIYCERVRDLLNPKSKGNLRVREHPIMGPYVEDLSK 183

  Fly   172 LPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHH----------SRMNIVD 226
            |.:.|..|:..:::.|.:.|.|..||||..||||||:.||....|.|.          |::::||
 Frog   184 LAVTSYHDIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQKRHDEMTNLDTEKVSKISLVD 248

  Fly   227 LAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHT------VIPYRDSVLTTVLQASL 285
            |||||....||.:|...:||.|||..|.::.||:.::|....      .||||||.||.:|:.:|
 Frog   249 LAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMQNKKKKSDFIPYRDSALTWLLKENL 313

  Fly   286 TAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLRLNPM---------------QVARQKQSLA 335
            ...|....:|.:||...:..|||||||:...||:::.|.:               :|||.:|.| 
 Frog   314 GGNSRTAMIAALSPADINYEETLSTLRYADRAKQIKCNAVINEDPNARLIRELKEEVARLRQLL- 377

  Fly   336 ARTTHVFRQALCTSTAIKSNAANH-----NSIVVPKSKYSTTKPLSAVLHRTRSELG-------- 387
                  :.|.|.......|.:|.|     .:.|.|.....:..||::.....:||..        
 Frog   378 ------YSQGLEDIVIDDSASAPHPPSPAAAPVSPPPLPGSLAPLASPTQNGQSEPFPEGEDAAE 436

  Fly   388 -MTPKAKKRARE----LLELEET 405
             .|.:|.:|.:|    :.||.||
 Frog   437 ICTEEAMERLQETEKIIAELNET 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nodNP_511125.2 KISc 8..318 CDD:276812 110/349 (32%)
ComEA 606..>645 CDD:441164
kif1cXP_031755447.1 KISc_KIF1A_KIF1B 4..355 CDD:276816 114/362 (31%)
Kinesin_assoc 352..524 CDD:465047 24/115 (21%)
FHA_KIF1C 500..601 CDD:438780
Blue background indicates that the domain is not in the aligned region.

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