DRSC/TRiP Functional Genomics Resources

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Protein Alignment nod and cana

DIOPT Version :10

Sequence 1:NP_511125.2 Gene:nod / 32107 FlyBaseID:FBgn0002948 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_001027247.1 Gene:cana / 3771934 FlyBaseID:FBgn0040233 Length:1931 Species:Drosophila melanogaster


Alignment Length:704 Identity:166/704 - (23%)
Similarity:275/704 - (39%) Gaps:168/704 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEGAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSL-IVDQN--EFHFDHAFPATISQDE 62
            |.....|::::.::..|.       ||.:.......:|:|: :.|.:  .:.||:.|....|..|
  Fly     1 MSTKNASSIQVCIKVRPC-------EPGLTSLWQVKEGRSIQLADSHAEPYVFDYVFDEGASNQE 58

  Fly    63 MYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTAR 127
            ::..:...:|...::|...|..|||||.:||:|:|    .|:  .::.|::..|..:||::::: 
  Fly    59 VFDRMAKHIVHACMQGSNGTIFAYGQTSSGKTYTM----MGD--EQNPGVMVLAAKEIFQQISS- 116

  Fly   128 QENNKDAIQVYASFIEIYNEKPFDLLGSTPH--------MPMVAARCQRCTCLPLHSQADLHHIL 184
             |..:|.: :...:|||||||.:|||.....        ..:|...|:...   :.|:.||...|
  Fly   117 -ETERDFL-LRVGYIEIYNEKIYDLLNKKNQDLKIHESGNGIVNVNCKESI---VTSEDDLLRQL 176

  Fly   185 ELGTRNRRVRPTNMNSNSSRSHAIVTIHVKS-KTHHSR--------MNIVDLAGSEGVRRTGHEG 240
            .:|.:.|.|..||||..|||||||..|.::| |:.||.        :::|||||||.|....|..
  Fly   177 YMGNKERVVGETNMNERSSRSHAIFRIIIESRKSDHSDNDTVKQSVLSLVDLAGSEQVDPADHAS 241

  Fly   241 VARQEGVNINLGLLSINKVVMSMAAGHTVIP--YRDSVLTTVLQASLTAQSYLTFLACISPHQCD 303
                       .|:....:|.|::......|  :|||.|..::..||......:.:..|:|  ..
  Fly   242 -----------SLMIFRNLVKSLSESVDSKPNSFRDSKLPRIMLPSLGGNVLTSIICTITP--SF 293

  Fly   304 LSETLSTLRFGTSAKKLRLNPMQVARQKQSLAARTTHVFRQ-----ALCTSTAIKSNAANHNSIV 363
            :.|:.||:.|||.|||:|..| ||.:    :.:.|| :.||     ::......|....|.:.:|
  Fly   294 VEESSSTISFGTCAKKIRCKP-QVCK----IDSETT-MMRQLDRGISMLKDKLAKKKIKNESQLV 352

  Fly   364 VP----KSKYSTTKPLSAV------LHRTRSELGMTPKAKKRARELLEL---EETTLELSSIHIQ 415
            :.    :.|....|.:|:.      |.:.|....:|....:....:|.|   ||:.|...|    
  Fly   353 LQELEGRIKRDMLKIVSSASLDDYRLQKRRRTWTLTASGSEGDAPVLALPEPEESRLPRPS---- 413

  Fly   416 DSSLSLLGFHSDSDKDRHLMPPPTG-----QEPRQASSQNSTLMGIVEETEPKESSKVQQSMVAP 475
                .|........:.|.:.|...|     :|.|..:....|:.|..::...:.:|::...|::.
  Fly   414 ----KLTNLPKPLFQRRGIAPKAKGICKTLKEKRLQTDNMDTMPGRAKQLGRETASRIPSVMMSK 474

  Fly   476 TVPTTV-RCQLFNTTISPISL-------------------------------------------R 496
            ....:| .|....|.||.::.                                           :
  Fly   475 KYQESVPNCDAPQTEISALTASNQVAKETIEKYEEQVKRLKETIERLEMENGKAVNLGEQFETHK 539

  Fly   497 ASSSQRE---LSGIQPMEETVVASPQQPC--LRRSVRLASSMRSQNYGAIP-----------KVM 545
            |.|.|.|   ||.|...:.|:| |.||..  |.|.| |.:|...|.....|           |.:
  Fly   540 AKSKQMEEELLSSISEKDSTIV-SLQQSLEELSRDV-LRNSKEDQMRSMCPELESSCERICNKCL 602

  Fly   546 NLRRSTRLAG-------------IREH--ATSVVVKNETDAIPHLRSTVQKKRT 584
            .|.|...||.             :|..  ||.:.:::......|....|.:|.|
  Fly   603 ELERLLPLASASGLDSVACQFDQLRSEIAATRMKLESMLSTFSHASCEVSQKTT 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nodNP_511125.2 KISc 8..318 CDD:276812 92/331 (28%)
ComEA 606..>645 CDD:441164
canaNP_001027247.1 Motor_domain 8..310 CDD:473979 94/333 (28%)
CCDC158 <505..>729 CDD:464943 31/154 (20%)
SMC_prok_B 622..1285 CDD:274008 7/35 (20%)
SMC_prok_B 1110..1875 CDD:274008
Blue background indicates that the domain is not in the aligned region.

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