DRSC/TRiP Functional Genomics Resources

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Protein Alignment nod and kif5b

DIOPT Version :9

Sequence 1:NP_001285129.1 Gene:nod / 32107 FlyBaseID:FBgn0002948 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_001122126.1 Gene:kif5b / 100038146 XenbaseID:XB-GENE-854737 Length:962 Species:Xenopus tropicalis


Alignment Length:720 Identity:178/720 - (24%)
Similarity:295/720 - (40%) Gaps:190/720 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 QFPPWSDGK---------------SLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQ 80
            :|.|.:|.:               ::::....:.||..|.:..||:::|.|....:|..:|:|:.
 Frog    14 RFRPLNDSEVTRGDKYVAKFQGEDTVVMASKPYVFDRVFQSNTSQEQVYNACAKAIVKDVLDGYN 78

  Fly    81 CTALAYGQTGTGKSYSMGMTPPGEIL-PEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEI 144
            .|..|||||.:||:::|    .|::. |:.:||:||.:.|||..:.:..||.:..|:|  |:.||
 Frog    79 GTIFAYGQTSSGKTHTM----EGKLHDPDGMGIIPRIVQDIFNYIYSMDENLEFHIKV--SYFEI 137

  Fly   145 YNEKPFDLLGSTP----------HMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMN 199
            |.:|..|||..:.          .:|.|....:|..|.|    .::...::.|..||.|..||||
 Frog   138 YLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSP----DEVMDTIDEGKSNRHVAVTNMN 198

  Fly   200 SNSSRSHAIVTIHVKSKTHHS------RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINK 258
            .:|||||:|..|:||.:...:      ::.:|||||||.|.:||.||....|..|||..|.|:..
 Frog   199 EHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSSLGN 263

  Fly   259 VVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLR-- 321
            |:.::|.|...||||||.:|.:||.||......|.:.|.||...:.:|:.|||.||..||.::  
 Frog   264 VISALAEGSVYIPYRDSKMTRILQDSLGGNCRTTIVICCSPSAYNEAESKSTLLFGQRAKTIKNT 328

  Fly   322 ------------------------------------LN--------PMQVARQKQ---------- 332
                                                ||        |::....|:          
 Frog   329 VCVNVELTAEQWKKKYEKEKEKTKSLRSTVQWLENELNRWRKGETVPIEEQYDKEKANMDAFVVD 393

  Fly   333 ----------SLAARTTHVFRQALCTSTAI--------KSNAANHNSIVVPKSKY---------- 369
                      :|||..|...|:. |.....        |....|..|.:|.|.|.          
 Frog   394 NFVNNEKPAVTLAANFTDAERRK-CEEEVTKLYKQLDDKDEEINQQSQLVEKLKQQMLDQEELLA 457

  Fly   370 STTKP---LSAVLHRTRSELGMTPKAKKRARELLE-LEETTL----------------ELSSIHI 414
            ||.:.   :.|.|:|.::|   ...:|:..:|:|: |||..:                ::.|..:
 Frog   458 STRRDQDNMQAELNRLQAE---NDASKEEVKEVLQALEELAVNYDQKSQEVEDKSKEYDILSEEL 519

  Fly   415 QDSSLSLLGFHSDSDKDRHLMPPPTGQEPRQASSQNSTLM------GIV----EETEPKESSKVQ 469
            ...|:.|....|:..|.:.:    |..:.::|:...::|:      ||.    :..:|:.|..:.
 Frog   520 NQKSVILSSIDSELQKLKEM----TNHQKKRATEMMTSLLKDLAEIGIAVGGNDGKQPEVSGMID 580

  Fly   470 Q---------SMVAPTVPTTV-RCQLFNTTISPISLRASSSQRELSGIQ---PMEETVVASPQ-- 519
            :         |.:...|.|.| ||:....|.|..:.:...:::||:..|   ...|..:.|..  
 Frog   581 EEFTVARLYISKMKSEVKTMVKRCKQLEGTQSESNKKMEENEKELAACQLRISQHEAKIKSLTEY 645

  Fly   520 -QPCLRRSVRLASSMRSQNYGAIPKVMNLRRSTRLAGI-REHATSVVVKNET-----DAIPHLRS 577
             |...::...|..|:.|.|    .:::.||...::..: :||...|....|.     :.|...|.
 Frog   646 VQNVEQKKRHLEESVDSLN----EELVKLRAQEKVHEMEKEHLNKVQTATEVKHAVEEQIQSHRE 706

  Fly   578 TVQKK 582
            |.||:
 Frog   707 THQKQ 711

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nodNP_001285129.1 KISc 8..325 CDD:214526 111/371 (30%)
KISc 8..318 CDD:276812 107/318 (34%)
ComEA 540..648 CDD:224472 11/49 (22%)
kif5bNP_001122126.1 KISc_KHC_KIF5 6..325 CDD:276820 109/320 (34%)
Smc <409..792 CDD:224117 62/315 (20%)
COG4372 709..>914 CDD:226809 2/3 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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