Sequence 1: | NP_511124.1 | Gene: | RpII215 / 32100 | FlyBaseID: | FBgn0003277 | Length: | 1887 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_014986.3 | Gene: | RPA190 / 854519 | SGDID: | S000005868 | Length: | 1664 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 1823 | Identity: | 473/1823 - (25%) |
---|---|---|---|
Similarity: | 750/1823 - (41%) | Gaps: | 506/1823 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MSTPTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEG-GRPKLGGLMDPRQGVIDRT 64
Fly 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYC------------------- 110
Fly 111 ---------------------SKMLVSPHNPKIKEIVMKSRGQPR--------------KRLAYV 140
Fly 141 YDLCKGKTICEGGEDMDLTKENQQ-----PDPNKKPGH------------GGCGHYQPSIRRTGL 188
Fly 189 DL---TAEWKHQ---------------NEDSQEKKIVVSAERVWEILKHITDEECFILGMDP--- 232
Fly 233 ----------------------------------------KYARPDWMIVTVLPVPPLAVR-PAV 256
Fly 257 VMFGAAKNQDDLTHKLSDIIKAN----------NELRKNEASGAAAHVIQENIKMLQFHVATLVD 311
Fly 312 NDMPGMPRAMQKSGK-----PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
Fly 372 VPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL--------------R 422
Fly 423 FHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLP-WSTFRMNLSCTSPYNA 486
Fly 487 DFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQ 551
Fly 552 ----------------VMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLII--------PGNV 592
Fly 593 NMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIA 657
Fly 658 GRFYGNIQTVINNWLLFEGHSIGIGD----------------TIADP--QTYNEIQQAIKKAKDD 704
Fly 705 VINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDK--TGGSAKKSLTEYNNLKAMVVSGSK 767
Fly 768 GSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 832
Fly 833 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQN 897
Fly 898 MPTVKLSNKSFEKRFKFDWSN-ERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQI 961
Fly 962 FPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQAN 1026
Fly 1027 ENATLLFQCLIRSTLCTKY---VSEEFRLSTEAF----------------EWLVGEIETRFQQAQ 1072
Fly 1073 ANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NISKKPKAPSLT---- 1132
Fly 1133 --------------------------VFLT----------GGAAR-------------------- 1141
Fly 1142 DAEKAKNVLCR-----LEHTTLRKV---------------------TANTAIYYDPDPQRTVISE 1180
Fly 1181 DQEFVN------VYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQI---------AEKINVG 1230
Fly 1231 FGEDLN-CIFNDDNADKLVLRIR---IMNNEE--NKFQDEDEAVDKMEDDMFLRCIEANMLSDMT 1289
Fly 1290 LQGI--EAIGKVYMHL-----PQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPI 1347
Fly 1348 RTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGIN 1412
Fly 1413 RQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIE 1477
Fly 1478 IPN 1480 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII215 | NP_511124.1 | PRK08566 | 14..887 | CDD:236292 | 303/1080 (28%) |
RNAP_II_RPB1_N | 15..868 | CDD:259848 | 295/1060 (28%) | ||
RNA_pol_Rpb1_5 | 822..1420 | CDD:282807 | 184/732 (25%) | ||
RNA_pol_Rpb1_6 | 890..1071 | CDD:282801 | 27/200 (14%) | ||
RNAP_II_Rpb1_C | 1050..1468 | CDD:132720 | 140/548 (26%) | ||
TCRP1 | 1602..1880 | CDD:291605 | |||
RCR | <1789..1864 | CDD:304939 | |||
RPA190 | NP_014986.3 | RNAP_I_RPA1_N | 16..1035 | CDD:259844 | 294/1056 (28%) |
RNA_pol_Rpb1_5 | 989..1611 | CDD:398596 | 184/732 (25%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |