Sequence 1: | NP_511124.1 | Gene: | RpII215 / 32100 | FlyBaseID: | FBgn0003277 | Length: | 1887 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_010141.1 | Gene: | RPO21 / 851415 | SGDID: | S000002299 | Length: | 1733 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 1913 | Identity: | 947/1913 - (49%) |
---|---|---|---|
Similarity: | 1250/1913 - (65%) | Gaps: | 222/1913 - (11%) |
- Green bases have known domain annotations that are detailed below.
Fly 7 SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETME--GGRPKLGGLMDPRQGVIDRTSRCQT 69
Fly 70 CAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE-IVMKSRGQP 133
Fly 134 RKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRTGLDLTAEWKHQN 198
Fly 199 E--DSQEKKI-VVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFG 260
Fly 261 AAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSG 325
Fly 326 KPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFN 390
Fly 391 IDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPT 455
Fly 456 LHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITP 520
Fly 521 QANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFS 585
Fly 586 LIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFL 650
Fly 651 ELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNM 715
Fly 716 ELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV 780
Fly 781 GQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVK 845
Fly 846 TAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEK 910
Fly 911 RFKFDWSNERLMKKVFTDDVIKE--MTDSSEAIQE------LEAEWDRLVSDRDSLRQIFPNGES 967
Fly 968 KVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLL 1032
Fly 1033 FQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLN 1097
Fly 1098 TFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVT 1162
Fly 1163 ANTAIYYDPDPQRTVISEDQEFVNVYYEMPD------FDPTRISPWLLRIELDRKRMTDKKLTME 1221
Fly 1222 QIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLS 1286
Fly 1287 DMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSS 1351
Fly 1352 NDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDT 1416
Fly 1417 GALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNT 1481
Fly 1482 LGNSMLGGAAMFIGGGSTPSMTPPMTPWANCNTPRYFSPPGHVSA--------MTPGGPSFSP-- 1536
Fly 1537 -SAASDA-SGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYS 1599
Fly 1600 PSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNI 1664
Fly 1665 YSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSP 1729
Fly 1730 TSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPT 1794
Fly 1795 SPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPM 1859
Fly 1860 YSPTAPSHYSPTSPAYSPSSPTFEESED 1887 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII215 | NP_511124.1 | PRK08566 | 14..887 | CDD:236292 | 492/878 (56%) |
RNAP_II_RPB1_N | 15..868 | CDD:259848 | 479/858 (56%) | ||
RNA_pol_Rpb1_5 | 822..1420 | CDD:282807 | 295/611 (48%) | ||
RNA_pol_Rpb1_6 | 890..1071 | CDD:282801 | 65/188 (35%) | ||
RNAP_II_Rpb1_C | 1050..1468 | CDD:132720 | 216/423 (51%) | ||
TCRP1 | 1602..1880 | CDD:291605 | 140/277 (51%) | ||
RCR | <1789..1864 | CDD:304939 | 31/74 (42%) | ||
RPO21 | NP_010141.1 | RNAP_II_RPB1_N | 15..853 | CDD:259848 | 479/858 (56%) |
RNA_pol_Rpb1_6 | 873..1056 | CDD:398590 | 65/190 (34%) | ||
RNAP_II_Rpb1_C | 1035..1446 | CDD:132720 | 216/423 (51%) | ||
RNA_pol_Rpb1_R | 1698..1709 | CDD:398599 | 8/10 (80%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C157346078 | |
Domainoid | 1 | 1.000 | 534 | 1.000 | Domainoid score | I37 |
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H721 | |
Inparanoid | 1 | 1.050 | 1656 | 1.000 | Inparanoid score | I6 |
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S300 |
OMA | 1 | 1.010 | - | - | QHG53835 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000819 | |
OrthoInspector | 1 | 1.000 | - | - | oto100218 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100210 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR19376 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1183 |
SonicParanoid | 1 | 1.000 | - | - | X2195 | |
TreeFam | 1 | 0.960 | - | - | ||
16 | 15.740 |