Sequence 1: | NP_511124.1 | Gene: | RpII215 / 32100 | FlyBaseID: | FBgn0003277 | Length: | 1887 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_113960.2 | Gene: | Polr1a / 83581 | RGDID: | 620824 | Length: | 1716 | Species: | Rattus norvegicus |
Alignment Length: | 1797 | Identity: | 464/1797 - (25%) |
---|---|---|---|
Similarity: | 749/1797 - (41%) | Gaps: | 434/1797 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 PLRQVKRVQFGILSPDEIRRMSVTE-GGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAGN 73
Fly 74 MTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYC---------------------------- 110
Fly 111 -------SKMLVSPHNPKIKEI---------------VMKSRGQPRKRLAYVYDLCK-------- 145
Fly 146 ----------------GKTICEGGEDMDLT--------KENQQPD---PNKKPGHGGC------- 176
Fly 177 -GHYQPSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM 240
Fly 241 IVTVLPVPPLAVRP------------AVVMFGAAKNQDDLTHKLSDIIKANNEL----------R 283
Fly 284 KNEASGAAAHVIQE------------NIKM-LQFHVATLVDNDM--------PGMPRAMQKSGKP 327
Fly 328 LKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNID 392
Fly 393 RMQELVRRGNSQYPGAKYIVRDNGERIDL-------------RFHPKSSDLHLQCGYKVE-RHLR 443
Fly 444 DDDLVIFNRQPTLHKMSMMGHRVKVLP-WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEV 507
Fly 508 ENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWD----AKMPQ 568
Fly 569 PCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYK-----------WI--------- 613
Fly 614 ----SPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWL-L 673
Fly 674 FEGHSIGIGDTIADPQTYNEIQQAIKKAK-------------------DDVINVIQKAHNMELEP 719
Fly 720 TPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 784
Fly 785 VEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAET 849
Fly 850 GYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKF 914
Fly 915 DWSN-ERLMKKVFTDDVIKEMTDSSEAIQELEA--EWDRLVSDRDSLRQIFPNGESKVVLPCNLQ 976
Fly 977 RMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQ-----C- 1035
Fly 1036 -----LIRSTLCTKYVSEEFRLSTEAF--EW-----------------LVGEIETRFQQAQANPG 1076
Fly 1077 EMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP--SLTVFLTGG 1138
Fly 1139 AARDAEKAKNVLCRL-EHTTLRKVTANTAIYYDPDPQRTVISE--DQEFVNVYYEM-----PD-- 1193
Fly 1194 --FDPTRISPWLLRI------------ELDRKRMTDKKLTMEQIA-------EKINVGFGEDLNC 1237
Fly 1238 IFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDM--------------------------- 1275
Fly 1276 ------------------FLRCIEA-----NMLSDMTLQGIEAIG-KVYMHLP------------ 1304
Fly 1305 ----------QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIF 1358
Fly 1359 QVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1423
Fly 1424 FEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDL 1465 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII215 | NP_511124.1 | PRK08566 | 14..887 | CDD:236292 | 294/1072 (27%) |
RNAP_II_RPB1_N | 15..868 | CDD:259848 | 283/1052 (27%) | ||
RNA_pol_Rpb1_5 | 822..1420 | CDD:282807 | 190/738 (26%) | ||
RNA_pol_Rpb1_6 | 890..1071 | CDD:282801 | 33/213 (15%) | ||
RNAP_II_Rpb1_C | 1050..1468 | CDD:132720 | 137/543 (25%) | ||
TCRP1 | 1602..1880 | CDD:291605 | |||
RCR | <1789..1864 | CDD:304939 | |||
Polr1a | NP_113960.2 | RNAP_I_RPA1_N | 16..1011 | CDD:259844 | 283/1049 (27%) |
RNA_pol_Rpb1_5 | 965..1666 | CDD:398596 | 190/738 (26%) | ||
Bridging helix. /evidence=ECO:0000250 | 968..980 | 7/11 (64%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1368..1493 | 14/124 (11%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D591636at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |