DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII215 and RpIIIC160

DIOPT Version :9

Sequence 1:NP_511124.1 Gene:RpII215 / 32100 FlyBaseID:FBgn0003277 Length:1887 Species:Drosophila melanogaster
Sequence 2:NP_001096987.2 Gene:RpIIIC160 / 32524 FlyBaseID:FBgn0030687 Length:1383 Species:Drosophila melanogaster


Alignment Length:1533 Identity:516/1533 - (33%)
Similarity:753/1533 - (49%) Gaps:259/1533 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 RQVKRVQFGILSPDEIRR---MSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAGN 73
            :::..|||||...|||::   :.:....:..|:.    :|...|::|.|.|:..:.:.|:||...
  Fly    13 KKISHVQFGISGADEIQQEALVRIISKNLYQAQR----QPVPYGVLDRRMGISTKDAMCETCGQG 73

  Fly    74 MTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSP----------HNPKIKEIVMK 128
            :.||.||||::|||.||||||....||.||:.:|..|:.:::.|          |||....:   
  Fly    74 LNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHNPNFSYL--- 135

  Fly   129 SRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPN----KKPGHGGCGHYQPSIRRTGLD 189
                 .|:..:|..|.|.|.:         ||......||    |.||.....|.....|:....
  Fly   136 -----GKKALHVQMLAKAKKV---------TKCPHCGSPNGGVKKGPGLLKILHDPYKGRKMDSL 186

  Fly   190 LTAEWKHQNEDSQEKKIVVS-------AER-----VWEILKHITDEECFILGMDPKYARPDWMIV 242
            .|:........:|..:.:.|       ||.     |.::.:.|...:..:|||....|.|..:||
  Fly   187 FTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIV 251

  Fly   243 TVLPVPPLAVRPAVVM-FGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHV 306
            |.:.|||..:||:|:. ..|...:||||.|.|:|:..|:.::::.|:|....:|.|:...||.||
  Fly   252 TRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHV 316

  Fly   307 ATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
            |....:::.|:|..|... |..:.|..|||||:||.|.||.|||||||.||||:|||||.|:|||
  Fly   317 ALYFHSEISGIPINMAPK-KTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVG 380

  Fly   372 VPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGA-----------KYIVRDNGERIDLRFHP 425
            ||..:|:.||:||.|.|.||..|:||||.|.|.:|||           ||:...|.|::      
  Fly   381 VPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNREKV------ 439

  Fly   426 KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDG 490
               ...|:||..|||||||.|:|:|||||:|||||:|.||.||.|..|||.|....:||||||||
  Fly   440 ---AQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDG 501

  Fly   491 DEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNL 555
            ||||||:||:.|.|||...:......::||:..:.::...||.:|....:|:::||:|:|:.|.|
  Fly   502 DEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQL 566

  Fly   556 -LMFLPTWDA----KMPQPCILKPRPLWTGKQIFSLIIPGN------VNMIRTHSTHPDEEDEGP 609
             ..||...|:    |:|.|.:||||.||||||:|||::..|      :||:.....:...:|   
  Fly   567 AACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKD--- 628

  Fly   610 YKWISPGDTKVMVEHGELIMGILCKKSLGTSAGS-LLHICFLELGHDIAGRFYGNIQTVINNWLL 673
               :...|:.:.:.:.||:.|::.|.::|:.... :.::...:.|...|.:....:..:.:.:|.
  Fly   629 ---LCSNDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQ 690

  Fly   674 FEGHSIGIGDTIADPQTYNEIQQAIKK--AKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRI 736
            ..|.|.||.|.....:.....:..:..  ||.:....:.||..::.:  ||.|..:|.|:.:.|.
  Fly   691 NRGFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQ--PGCTPEETLESVMLRE 753

  Fly   737 LNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
            |:..|::...:....|...|:...|.:||||||||||||:|||||||.:.|||:|.||..|.|||
  Fly   754 LSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPH 818

  Fly   802 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVN 866
            |.:....|.:||||:||:.:||||:||:||.|.|||||:|||||||||||:||||:|.:|.::|:
  Fly   819 FERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVH 883

  Fly   867 YDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVI 931
            |||||||:|.:::...||.|||....:|.:|.|.                               
  Fly   884 YDGTVRNAVNEMVDTIYGGDGLDPVSMETRNKPV------------------------------- 917

  Fly   932 KEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDL 996
                              .||...|:||...|.|:.:   |.|.:.|                  
  Fly   918 ------------------DLVHQYDNLRAQHPQGKDR---PLNAEEM------------------ 943

  Fly   997 SPIRVIKGVKTLLERCVIVTGND-----------RISKQANENATLLFQCLIRSTLCTKYVSEEF 1050
                 .:.::|||.........|           .:||:..:......:|:   .||.:...   
  Fly   944 -----SEALETLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCI---DLCHQIEC--- 997

  Fly  1051 RLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR 1115
             |:||.....|..|..|:.:|...||..|||:||||:|||.|||||.|||||||:|.|:|.||||
  Fly   998 -LTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1061

  Fly  1116 LKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISE 1180
            :.||||.:|....|.:|..|..  ....|.|:.|..|:|.|||.::::...:...|......|..
  Fly  1062 IVEIINATKTISTPIITAELEN--CHSMEFARQVKARIEKTTLAELSSYVEVVCGPYSCYLAIGV 1124

  Fly  1181 DQEFVNVYYEMPDFDPTRISPWLLRIELD-------RKRMTDKKLTMEQIAEKINVGFGEDLNCI 1238
            |.              .||....|.|:||       :.||..|...:|.:|.:            
  Fly  1125 DM--------------ARIKLLGLHIDLDTIVFSILKSRMRVKPTQVEVVASQ------------ 1163

  Fly  1239 FNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLS-DMTLQGIEAIGKVYMH 1302
                  .::|:|:......                     .|.|.:.. .::||.:...|     
  Fly  1164 ------SRIVVRVEATRTS---------------------TINAELARLALSLQNVVVAG----- 1196

  Fly  1303 LPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVR 1367
            ||..:   |.||. ..:.:....:.|..:|..:..|::...|...||.||:||||:|.|||||.|
  Fly  1197 LPNIN---RAVIA-VDDARQPPTYKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAAR 1257

  Fly  1368 KSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 1432
            ..:..|:..|::.:|:.|::||:.||...|||:|.::.|||||:.:.........|||:|.|.|.
  Fly  1258 TIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLF 1322

  Fly  1433 DAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAE 1470
            |||.:.:||.:.||||.||:|....:|||.|.||...|
  Fly  1323 DAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQQHE 1360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII215NP_511124.1 PRK08566 14..887 CDD:236292 350/927 (38%)
RNAP_II_RPB1_N 15..868 CDD:259848 340/907 (37%)
RNA_pol_Rpb1_5 822..1420 CDD:282807 183/616 (30%)
RNA_pol_Rpb1_6 890..1071 CDD:282801 28/191 (15%)
RNAP_II_Rpb1_C 1050..1468 CDD:132720 140/425 (33%)
TCRP1 1602..1880 CDD:291605
RCR <1789..1864 CDD:304939
RpIIIC160NP_001096987.2 PRK08566 13..919 CDD:236292 356/993 (36%)
RNAP_III_RPC1_N 24..889 CDD:259847 339/903 (38%)
RNA_pol_Rpb1_5 839..1304 CDD:282807 183/610 (30%)
RNAP_III_Rpc1_C 1013..1353 CDD:132723 132/403 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466355
Domainoid 1 1.000 74 1.000 Domainoid score I487
eggNOG 1 0.900 - - E1_COG0086
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 293 1.000 Inparanoid score I87
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D11825at50557
OrthoFinder 1 1.000 - - FOG0000819
OrthoInspector 1 1.000 - - otm51395
orthoMCL 1 0.900 - - OOG6_100210
Panther 1 1.100 - - P PTHR19376
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
109.800

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