Sequence 1: | NP_511124.1 | Gene: | RpII215 / 32100 | FlyBaseID: | FBgn0003277 | Length: | 1887 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001096987.2 | Gene: | RpIIIC160 / 32524 | FlyBaseID: | FBgn0030687 | Length: | 1383 | Species: | Drosophila melanogaster |
Alignment Length: | 1533 | Identity: | 516/1533 - (33%) |
---|---|---|---|
Similarity: | 753/1533 - (49%) | Gaps: | 259/1533 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 12 RQVKRVQFGILSPDEIRR---MSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAGN 73
Fly 74 MTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSP----------HNPKIKEIVMK 128
Fly 129 SRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPN----KKPGHGGCGHYQPSIRRTGLD 189
Fly 190 LTAEWKHQNEDSQEKKIVVS-------AER-----VWEILKHITDEECFILGMDPKYARPDWMIV 242
Fly 243 TVLPVPPLAVRPAVVM-FGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHV 306
Fly 307 ATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 371
Fly 372 VPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGA-----------KYIVRDNGERIDLRFHP 425
Fly 426 KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDG 490
Fly 491 DEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNL 555
Fly 556 -LMFLPTWDA----KMPQPCILKPRPLWTGKQIFSLIIPGN------VNMIRTHSTHPDEEDEGP 609
Fly 610 YKWISPGDTKVMVEHGELIMGILCKKSLGTSAGS-LLHICFLELGHDIAGRFYGNIQTVINNWLL 673
Fly 674 FEGHSIGIGDTIADPQTYNEIQQAIKK--AKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRI 736
Fly 737 LNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Fly 802 FIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVN 866
Fly 867 YDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVI 931
Fly 932 KEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDL 996
Fly 997 SPIRVIKGVKTLLERCVIVTGND-----------RISKQANENATLLFQCLIRSTLCTKYVSEEF 1050
Fly 1051 RLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPR 1115
Fly 1116 LKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISE 1180
Fly 1181 DQEFVNVYYEMPDFDPTRISPWLLRIELD-------RKRMTDKKLTMEQIAEKINVGFGEDLNCI 1238
Fly 1239 FNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLS-DMTLQGIEAIGKVYMH 1302
Fly 1303 LPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVR 1367
Fly 1368 KSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 1432
Fly 1433 DAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAE 1470 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII215 | NP_511124.1 | PRK08566 | 14..887 | CDD:236292 | 350/927 (38%) |
RNAP_II_RPB1_N | 15..868 | CDD:259848 | 340/907 (37%) | ||
RNA_pol_Rpb1_5 | 822..1420 | CDD:282807 | 183/616 (30%) | ||
RNA_pol_Rpb1_6 | 890..1071 | CDD:282801 | 28/191 (15%) | ||
RNAP_II_Rpb1_C | 1050..1468 | CDD:132720 | 140/425 (33%) | ||
TCRP1 | 1602..1880 | CDD:291605 | |||
RCR | <1789..1864 | CDD:304939 | |||
RpIIIC160 | NP_001096987.2 | PRK08566 | 13..919 | CDD:236292 | 356/993 (36%) |
RNAP_III_RPC1_N | 24..889 | CDD:259847 | 339/903 (38%) | ||
RNA_pol_Rpb1_5 | 839..1304 | CDD:282807 | 183/610 (30%) | ||
RNAP_III_Rpc1_C | 1013..1353 | CDD:132723 | 132/403 (33%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45466355 | |
Domainoid | 1 | 1.000 | 74 | 1.000 | Domainoid score | I487 |
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 293 | 1.000 | Inparanoid score | I87 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D11825at50557 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000819 | |
OrthoInspector | 1 | 1.000 | - | - | otm51395 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100210 | |
Panther | 1 | 1.100 | - | - | P | PTHR19376 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
10 | 9.800 |