DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII215 and UBXN7

DIOPT Version :9

Sequence 1:NP_511124.1 Gene:RpII215 / 32100 FlyBaseID:FBgn0003277 Length:1887 Species:Drosophila melanogaster
Sequence 2:NP_056377.1 Gene:UBXN7 / 26043 HGNCID:29119 Length:489 Species:Homo sapiens


Alignment Length:469 Identity:90/469 - (19%)
Similarity:149/469 - (31%) Gaps:154/469 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   472 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQ----- 531
            ||...::|...|:..    :|:...:||..|...|.|.:...|::      .:|...|..     
Human    60 STSSASVSTVRPHTE----EEVRAPIPQKQEILVEPEPLFGAPKR------RRPARSIFDGFRDF 114

  Fly   532 --DTLTAVRKM-----------TKRDVFITREQVMNLLMFLPTWDAKMPQ--------------P 569
              :|:...:::           |..|:|.....:|:...|....:....|              .
Human   115 QTETIRQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFA 179

  Fly   570 CILKPRPLWTGKQIFSLIIPGNVNMIRTHST-----HPDEEDE--------GPYKWISPGD---- 617
            |....|.:|:.:.:        .|:||.|..     |..||.:        |.:.::|..|    
Human   180 CQCLNRDVWSNEAV--------KNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTG 236

  Fly   618 ------------------TKVMVEHGELIMGI------LCKKS---LGTSAGSLLHICF---LEL 652
                              |..:.|||:| .|:      .|.:|   :..|..|.|....   |:.
Human   237 QKLVEWHQLDVSSFLDQVTGFLGEHGQL-DGLSSSPPKKCARSESLIDASEDSQLEAAIRASLQE 300

  Fly   653 GHDIAGRFYGNIQTVINNWL-------LFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQ 710
            .|      :.:.||..::..       ||.|....|....:|.:  .|::...|..|....::  
Human   301 TH------FDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEE--EEVENLAKSRKSPHKDL-- 355

  Fly   711 KAHNME------LEP----TPGN-TLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVV- 763
             .|..|      .||    .||. |..|......:.||....:|..|..:.  .:.|..||.:: 
Human   356 -GHRKEENRRPLTEPPVRTDPGTATNHQGLPAVDSEILEMPPEKADGVVEG--IDVNGPKAQLML 417

  Fly   764 --SGSKGSNINI---SQVIACVGQQNVEGKRIP-------YGFRKRTLPHFIKDDYGPESRGFVE 816
              ...|...|.:   ::::|.|  ::|:.|..|       ..|.:|.|.|...|....|      
Human   418 RYPDGKREQITLPEQAKLLALV--KHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQE------ 474

  Fly   817 NSYLAGLTPSEFYF 830
                |||.|.|..|
Human   475 ----AGLCPQETVF 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII215NP_511124.1 PRK08566 14..887 CDD:236292 90/469 (19%)
RNAP_II_RPB1_N 15..868 CDD:259848 90/469 (19%)
RNA_pol_Rpb1_5 822..1420 CDD:282807 5/9 (56%)
RNA_pol_Rpb1_6 890..1071 CDD:282801
RNAP_II_Rpb1_C 1050..1468 CDD:132720
TCRP1 1602..1880 CDD:291605
RCR <1789..1864 CDD:304939
UBXN7NP_056377.1 UBA_UBXD7 16..51 CDD:270530
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 56..77 4/20 (20%)
UAS 149..261 CDD:239256 17/119 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 300..384 19/94 (20%)
UBX_UBXN7 412..487 CDD:340471 21/85 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0086
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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