DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr2A and UBXN7

DIOPT Version :10

Sequence 1:NP_511124.1 Gene:Polr2A / 32100 FlyBaseID:FBgn0003277 Length:1887 Species:Drosophila melanogaster
Sequence 2:NP_056377.1 Gene:UBXN7 / 26043 HGNCID:29119 Length:489 Species:Homo sapiens


Alignment Length:469 Identity:90/469 - (19%)
Similarity:149/469 - (31%) Gaps:154/469 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   472 STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQ----- 531
            ||...::|...|:..    :|:...:||..|...|.|.:...|::      .:|...|..     
Human    60 STSSASVSTVRPHTE----EEVRAPIPQKQEILVEPEPLFGAPKR------RRPARSIFDGFRDF 114

  Fly   532 --DTLTAVRKM-----------TKRDVFITREQVMNLLMFLPTWDAKMPQ--------------P 569
              :|:...:::           |..|:|.....:|:...|....:....|              .
Human   115 QTETIRQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFA 179

  Fly   570 CILKPRPLWTGKQIFSLIIPGNVNMIRTHST-----HPDEEDE--------GPYKWISPGD---- 617
            |....|.:|:.:.:        .|:||.|..     |..||.:        |.:.::|..|    
Human   180 CQCLNRDVWSNEAV--------KNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTG 236

  Fly   618 ------------------TKVMVEHGELIMGI------LCKKS---LGTSAGSLLHICF---LEL 652
                              |..:.|||:| .|:      .|.:|   :..|..|.|....   |:.
Human   237 QKLVEWHQLDVSSFLDQVTGFLGEHGQL-DGLSSSPPKKCARSESLIDASEDSQLEAAIRASLQE 300

  Fly   653 GHDIAGRFYGNIQTVINNWL-------LFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQ 710
            .|      :.:.||..::..       ||.|....|....:|.:  .|::...|..|....::  
Human   301 TH------FDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEE--EEVENLAKSRKSPHKDL-- 355

  Fly   711 KAHNME------LEP----TPGN-TLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVV- 763
             .|..|      .||    .||. |..|......:.||....:|..|..:.  .:.|..||.:: 
Human   356 -GHRKEENRRPLTEPPVRTDPGTATNHQGLPAVDSEILEMPPEKADGVVEG--IDVNGPKAQLML 417

  Fly   764 --SGSKGSNINI---SQVIACVGQQNVEGKRIP-------YGFRKRTLPHFIKDDYGPESRGFVE 816
              ...|...|.:   ::::|.|  ::|:.|..|       ..|.:|.|.|...|....|      
Human   418 RYPDGKREQITLPEQAKLLALV--KHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQE------ 474

  Fly   817 NSYLAGLTPSEFYF 830
                |||.|.|..|
Human   475 ----AGLCPQETVF 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr2ANP_511124.1 RNAP_II_RPB1_N 15..868 CDD:259848 90/469 (19%)
RNA_pol_Rpb1_6 890..1071 CDD:461511
RNAP_II_Rpb1_C 1050..1468 CDD:132720
Herpes_BLLF1 <1498..1862 CDD:282904
PTZ00449 <1707..1880 CDD:185628
UBXN7NP_056377.1 UBA_UBXD7 16..51 CDD:270530
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 56..77 4/20 (20%)
UAS 149..261 CDD:239256 17/119 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 300..384 19/94 (20%)
UBX_UBXN7 412..487 CDD:340471 21/85 (25%)
Blue background indicates that the domain is not in the aligned region.

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