Sequence 1: | NP_511124.1 | Gene: | RpII215 / 32100 | FlyBaseID: | FBgn0003277 | Length: | 1887 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_056240.2 | Gene: | POLR1A / 25885 | HGNCID: | 17264 | Length: | 1720 | Species: | Homo sapiens |
Alignment Length: | 1836 | Identity: | 468/1836 - (25%) |
---|---|---|---|
Similarity: | 741/1836 - (40%) | Gaps: | 508/1836 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 PLRQVKRVQFGILSPDEIRRMSVTE-GGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAGN 73
Fly 74 MTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPH-------------------- 118
Fly 119 ----------------NPKIKEI---------------VMKSRGQPRKRLAYVYDLCKGKT---- 148
Fly 149 -------------ICEGGEDM-------DLT------------KENQQPDPNKKPGHGGCGHYQP 181
Fly 182 SIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHI---TDEECFILGMDPKYARPDWMIVT 243
Fly 244 VLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK-------- 300
Fly 301 ----------------------------MLQFHVATLVDNDM--------PGMPRAMQKSGKPLK 329
Fly 330 AIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRM 394
Fly 395 QELVRRGNSQYPGAKYIVRDNGER-----IDLRFH--------------PKSSDLHLQCGYKVER 440
Fly 441 HLRDDDLVIFNRQPTLHKMSMMGHRVKVLP-WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETR 504
Fly 505 AEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWD----AK 565
Fly 566 MPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYK-----------WIS----- 614
Fly 615 -PG-------DTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNW 671
Fly 672 L-LFEGHSIGIGDTIADPQTYNEIQQAIKKAK-------------------DDVINVIQKAHNME 716
Fly 717 LEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG 781
Fly 782 QQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 846
Fly 847 AETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKR 911
Fly 912 FKFDWSN-ERLMKKVFTDDVIKEMTDSSEAIQELEA--EWDRLVSDRDSLRQIFPNGESKVVLPC 973
Fly 974 NLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQ---- 1034
Fly 1035 -C------LIRSTLCTKYVSEEFRLSTEAF--EW-----------------LVGEIETRFQQAQA 1073
Fly 1074 NPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAP--SLTVFL 1135
Fly 1136 TGGAARDAEKAKNVLCR----------------------------------LEH----------- 1155
Fly 1156 --------------------------TTLRKVTANTAIYYDPD----------PQRTVISEDQEF 1184
Fly 1185 VNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVL 1249
Fly 1250 RIRIMNNEEN-------KFQDEDEAVD-KMEDDMFLRCI---EANMLSDMTLQGIEAIGK----- 1298
Fly 1299 ---------------------VYMHLP----------------------QTDSKKRIVITETGEF 1320
Fly 1321 KAIGEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
Fly 1385 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSEN 1449
Fly 1450 IIMGQLPKMGTGCFDL 1465 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII215 | NP_511124.1 | PRK08566 | 14..887 | CDD:236292 | 289/1075 (27%) |
RNAP_II_RPB1_N | 15..868 | CDD:259848 | 278/1055 (26%) | ||
RNA_pol_Rpb1_5 | 822..1420 | CDD:282807 | 200/774 (26%) | ||
RNA_pol_Rpb1_6 | 890..1071 | CDD:282801 | 36/213 (17%) | ||
RNAP_II_Rpb1_C | 1050..1468 | CDD:132720 | 143/579 (25%) | ||
TCRP1 | 1602..1880 | CDD:291605 | |||
RCR | <1789..1864 | CDD:304939 | |||
POLR1A | NP_056240.2 | PRK08566 | 4..1025 | CDD:236292 | 294/1089 (27%) |
RNAP_I_RPA1_N | 16..1004 | CDD:259844 | 278/1052 (26%) | ||
RNA_pol_Rpb1_5 | 958..1671 | CDD:282807 | 201/775 (26%) | ||
Bridging helix. /evidence=ECO:0000250 | 961..973 | 7/11 (64%) | |||
RNAP_I_Rpa1_C | 1199..1716 | CDD:132722 | 139/543 (26%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1365..1498 | 34/157 (22%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D591636at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.820 |