Sequence 1: | NP_511124.1 | Gene: | RpII215 / 32100 | FlyBaseID: | FBgn0003277 | Length: | 1887 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001074716.1 | Gene: | Polr3a / 218832 | MGIID: | 2681836 | Length: | 1390 | Species: | Mus musculus |
Alignment Length: | 1543 | Identity: | 508/1543 - (32%) |
---|---|---|---|
Similarity: | 775/1543 - (50%) | Gaps: | 270/1543 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 12 RQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGR-PKLGGLMDPRQGVIDRTSRCQTCAGNMT 75
Fly 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPK-----IKE---IVMKSRGQ 132
Fly 133 PRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRTGLDLTAEWKHQ 197
Fly 198 NEDSQEKKIV------------VSAER-------------------VWEILKHITDEECFILGMD 231
Fly 232 PKYARPDWMIVTVLPVPPLAVRPAVVM-FGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVI 295
Fly 296 QENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Fly 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDN---------G 416
Fly 417 ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT 481
Fly 482 SPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVF 546
Fly 547 ITREQVMNLL-MFLPTWDAK----MPQPCILKPRPLWTGKQIFSLII-PGNVNMIRTHSTHPDEE 605
Fly 606 DEGPYKWISPGDTKVMVEHGELIMGILCKKSLGT-SAGSLLHICFLELGHDIAGRFYGNIQTVIN 669
Fly 670 NWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINV--------IQKAHNMELEPTPGNTLR 726
Fly 727 QTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP 791
Fly 792 YGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRL 856
Fly 857 IKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERL 921
Fly 922 MKKVFTDDVI--KEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQK 984
Fly 985 IFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEE 1049
Fly 1050 FRLSTEAFEWLVGEIET---RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1111
Fly 1112 GVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRT 1176
Fly 1177 VISEDQEFVNVYYEMPD--FDPTRISPWLLRIELDRKRMTDKKLTMEQI-----AEKINVG---- 1230
Fly 1231 --FGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGI 1293
Fly 1294 EAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIF 1358
Fly 1359 QVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1423
Fly 1424 FEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK 1471 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII215 | NP_511124.1 | PRK08566 | 14..887 | CDD:236292 | 340/937 (36%) |
RNAP_II_RPB1_N | 15..868 | CDD:259848 | 329/917 (36%) | ||
RNA_pol_Rpb1_5 | 822..1420 | CDD:282807 | 183/615 (30%) | ||
RNA_pol_Rpb1_6 | 890..1071 | CDD:282801 | 30/185 (16%) | ||
RNAP_II_Rpb1_C | 1050..1468 | CDD:132720 | 137/433 (32%) | ||
TCRP1 | 1602..1880 | CDD:291605 | |||
RCR | <1789..1864 | CDD:304939 | |||
Polr3a | NP_001074716.1 | PRK08566 | 7..932 | CDD:236292 | 348/975 (36%) |
RNAP_III_RPC1_N | 24..891 | CDD:259847 | 330/913 (36%) | ||
RNA_pol_Rpb1_5 | 841..1317 | CDD:282807 | 183/615 (30%) | ||
RNAP_III_Rpc1_C | 1021..1360 | CDD:132723 | 131/408 (32%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D591636at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000819 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100210 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
6 | 5.720 |